Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g2157 ATGTCTGCTGCTGTGTGCGGAGGCAAGAGATCTTTCTTCGAAGAGCTTCCTCCTTCTCCGCCACTCGCTAAGAGGATTCGTTGCTCTTCCTCTACCTCCCCCATTCGATTACCTCCTCATTCTCTCATCGACCAGCTCCGCCATCTCTTTCCTCACATGGATCACCAGGTTCTTGAGAGAGCTCTCCAAGAATGTGGCAATGATCTAGATGCTACCATCAAGAGACTGAATGAGCTGTACCTGGGAACTGCTGGTGGGAACTCGGGAACTGCTGAAGAATCGGAAGTTAATGTTAATGTAGATGCAGAAACTGTGCTAGGTAAATTGGAAGATGATCAGAATGTTTCTGCTTCTGAGAACCCGCCTGCTTCGGACAACCTTCCTGGAAATGGAGCAGAATGGATTGATTTTTTTGTTAGAGAAATGATGATTGCTACTAGCATTGATGATGCAAGAGCCCGCGCAGCTAGAATGCTGGAGGTTCTAGAGAAATCAATCAGTGCACGGGCAAGGGCTGAGGCAGCTGATGTTCTTCAGAAGGAAAATTTGATGCTAAAGGAACAAATTGAAGTGTTGATCAAGGATAAAAATTCCTTTAAAAATGCTTTTAAATACCAGCGCGAACGGTATTCTGATTATGAGGAAAAGGTCCAAGAGCTGCAGCATTTGAAGCCGTTAGTGTCTCAATACCAGGAGCAGATAAGAACTCTTGAGGTGAATAACTATGCTTTGACAATGTATTTGAAGCAGGCGCAACAGAGCAGCCCTTTTCCTGGGCATTTCCCACCTGATGTCTTCTAA 801 0.4532 MSAAVCGGKRSFFEELPPSPPLAKRIRCSSSTSPIRLPPHSLIDQLRHLFPHMDHQVLERALQECGNDLDATIKRLNELYLGTAGGNSGTAEESEVNVNVDAETVLGKLEDDQNVSASENPPASDNLPGNGAEWIDFFVREMMIATSIDDARARAARMLEVLEKSISARARAEAADVLQKENLMLKEQIEVLIKDKNSFKNAFKYQRERYSDYEEKVQELQHLKPLVSQYQEQIRTLEVNNYALTMYLKQAQQSSPFPGHFPPDVF* 267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g2157 266 PANTHER UBIQUITIN SYSTEM COMPONENT CUE PROTEIN 1 266 - -
Lja3g2157 266 Pfam CUE domain 40 78 IPR003892 GO:0043130
Lja3g2157 266 CDD CUE 40 76 - -
Lja3g2157 266 ProSiteProfiles CUE domain profile. 38 81 IPR003892 GO:0043130
Lja3g2157 266 SUPERFAMILY UBA-like 40 83 IPR009060 GO:0005515
Lja3g2157 266 Coils Coil 175 195 - -
Lja3g2157 266 Gene3D - 30 85 - -
Lja3g2157 266 PANTHER UBIQUITIN SYSTEM COMPONENT CUE PROTEIN 1 266 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g2157 Lja-Chr3 25281008 25284727 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g2157 - - gmx:100813137 399.438
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g2157 3 25281008 25284727 Lja3g2157 3 25281008 25284727 ECH
Lja3g5212 3 94430257 94433107 Lja3g2157 3 25281008 25284727 PCT