Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g2103 ATGCACGCTGGTTCCTTTTCCACCATGCCTTCCCTCTCAGAAGCCTTTCTTTCTCACCCTGTTCACCTACATCACAAGCTACCTGACCTGAACTCTCTTCAAGAACTCCCTGATACTTATGCCTGGACACAACACGATGACGATCACCATCACACTAGTTACCCTAATTCCAATCCTTTCCCAGCAGTAGGTGAGTCTACGGTTCCTGTTATTGATCTCAACGACCCAAATGCTACAAAGCTCATTGGCCATGCATGCAAAAGTTGGGGTGTGTTCCAAGTGGTGAACCATGGTGTTCCGATGAGCCTCTTCAATGAAATTCAGCGCGTTGGTCAGGCACTATTCTCTCTTCCGCTTCACCACAAGCTCAAAGCAGCTCGTTCCCCGGATGGAGTTTCCGGCTACGGCCGCGCCCGGATCTCCTCCTTCTTTCCCAAGCTCATGTGGTCTGAGTGCTTCACAATTTTTGAATCCCCACTTGAGCATTTCCTCCAACTCTGGCCCCAAGACCACAGTAAATATTGTGACATTGTCGTGCAATATGAAGAGGCCATGAGAAAGCTAGCAGGGAAGCTCATGTGCCTTGTGTTGGCTTCCCTCGGCATTTCAAACAAAGACCTAAAATGGGCCGGCCCAAGAGGTGAATTCAACGAGGCCTGTGCAGCTTTGCATCTAAACTCCTACCCAAGTTGCCCGGATCCGGATCGGGCCATGGGCCTTGCCCCGCATACCGATTCCACCCTCCTTACAATCCTCTACCAAAATAACATCAGCGGGTTGCAGGTCCTCAGAGAAGGTGCGGGGTGGGTGACGGTGCCACCCACTCCCGGAGGCCTCGTGGTAAACATGGGTGACCTCCTTCACATTTTGTCAAACGGGTTGTACAGGAGTGTGCTCCATCGGGTGCTTGTAAACCGAACCCAACAACGATTCTCGGTTGCCTATCTTTATGGGCCTCCAGCAAATGTCCAAATATCTCCTCATGTGAAGTTGATAGGCCCAAGTAGGCCTGCACTTTATCGTCCAGTGACTTGGAACGAGTACCTTGGCACCAAAGCAAAGCATTTCAATAAGGCACTCTCATTGGTGCAGCTTTGTGCATCTATCAACAGTTTGCCTCAAAATCACAGCGTACAAGTGGGCTAG 1146 0.5061 MHAGSFSTMPSLSEAFLSHPVHLHHKLPDLNSLQELPDTYAWTQHDDDHHHTSYPNSNPFPAVGESTVPVIDLNDPNATKLIGHACKSWGVFQVVNHGVPMSLFNEIQRVGQALFSLPLHHKLKAARSPDGVSGYGRARISSFFPKLMWSECFTIFESPLEHFLQLWPQDHSKYCDIVVQYEEAMRKLAGKLMCLVLASLGISNKDLKWAGPRGEFNEACAALHLNSYPSCPDPDRAMGLAPHTDSTLLTILYQNNISGLQVLREGAGWVTVPPTPGGLVVNMGDLLHILSNGLYRSVLHRVLVNRTQQRFSVAYLYGPPANVQISPHVKLIGPSRPALYRPVTWNEYLGTKAKHFNKALSLVQLCASINSLPQNHSVQVG* 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g2103 381 Pfam non-haem dioxygenase in morphine synthesis N-terminal 68 168 IPR026992 -
Lja3g2103 381 ProSiteProfiles Fe(2+) 2-oxoglutarate dioxygenase domain profile. 218 319 IPR005123 -
Lja3g2103 381 SUPERFAMILY Clavaminate synthase-like 26 356 - -
Lja3g2103 381 PANTHER GIBBERELLIN 3-BETA-DIOXYGENASE 1-LIKE 11 370 - -
Lja3g2103 381 Pfam 2OG-Fe(II) oxygenase superfamily 223 319 IPR044861 -
Lja3g2103 381 Gene3D - 25 350 IPR027443 -
Lja3g2103 381 PANTHER OXOGLUTARATE/IRON-DEPENDENT DIOXYGENASE 11 370 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g2103 Lja-Chr3 24531958 24534875 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g2103 62 360 Glycosyltransferase AT5G59530 30.063 2.64e-37 136
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g2103 K04124 - gmx:100795921 586.645
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g2103 3 24531958 24534875 Lja3g2103 3 24531958 24534875 ECH
Lja3g5155 3 93913679 93915626 Lja3g2103 3 24531958 24534875 PCT