Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g2049 ATGGTTCGGGCACTGGAACAAGAGCAGGAAAGTTACAGGTCCAAATTATTCCATTTCAGAGGGATGTTTGAGAATACGGGGAGGCATACAAAGAGCTTGAGCATTGAGAGCGCCAGCACGTTAAATCCTTCAGACGAAGATCCAGCAACATCGAGAAGTCAAGGATCAAAACCTCTAAATGATTCTACTGAGAAGGCTCAAAGGTCAAGAGCAATCAAGGAGGAAATAGCAGCAAAAGAAGCCAAAGAGAAGCTATTGCAAGAAATGGAACAGATGAAGGAGAGATTTGCTAAATTGCTATTGGGGGAGGATATGTCTGGTGGAGGAAAGGGTGTTTCATCAGCTCTGGCACTGTCAAATGCATTCACAAACCTTGCTGCTGCTGTTTTTGGTGAACAAAAGCGCCTAGAGCCGATGCCGCCCGAGAGGAAAGCCAGATGGAGAAAGGAAATTGATTGGCTTCTATCAGTGACAGATTATGTTGTTGAGATGGTTCCTACTCAACAAAAAGCAAAAGATGGATCCAGCATGGAGATTATGACAACGCGACAACGAACGGATCTCCACATGAATATCCCTGCCTTAAGAAAGCTTGACAACATGCTTATTGATTGTCTAGATAACTTCAAAGACCAGAATGAGTTCTACTATGTATCAAAAGATGCAGATGATGCAGATAAAGATAGTTCAAAGAGAAAAAATGATGACAAGTGGTGGTTACCTACACCTAAGGTTCCTGCAGAGGGTTTATCTGATGTGGCGAGAAGGTTTCTGCAGTATCAAAAAGATTGTATGAATCAAGTACTTAAAGCAGCGATGGCCATAAATGCACAGACCCTATCGGAGATGGAGATCCCTGAAAGCTATATTGAATCCCTACCCAAGAATGGAAGAGCCAGTCTAGGGGACTCGATCTACCGTAGCATTACAGATGACGTTTTTGATCCTGATCAGTTCCTAGCTACTATGGACATGACATCAGAACATAAAATCCTAGATCTCAAGAACAGAATCGAGGCGTCAATAGTGATTTGGAAGCGGAAGATGAACCAAAAAGATACCAAGTCAGCTTGGGGTTCTGCTGTGAGCTTGGAAAAAAGAGAACTCTTTGAAGAGAGAGCAGAAACCATCTTAATTCTTTTGAAGCACCGTTTTCCTGGGCTTCCCCAATCTTCATTGGATATAAGCAAAATCCAATTCAACCGGGATGTGGGGCAAGCTGTTCTTGAAAGCTATTCAAGAATATTGGAAAGTTTGGCTTTTACAGTGCTGTCAAGAATAGAAGATGTACTCCATGCAGATCACCTCACTCAAAACCCATCACTAGCTGGAAGAAGGAGCAGTGTGAGAAACCAAGTTCCCAAGCCAGAGAAGTGTCCAACTCCTAGAGAAGAGGTGGACAAGGGTGGAGCAGAAACACCCGGGTCAATGACACTATCTGATTTCATGGGTTGGCATGGTGATCAAGGTGACTCAGACATTAAGAAGGACCCTCTTGCTGCAACAGATGACTTCTACAAAGACATTGATAGTGGAAAGCCTCAAAAACTCCCAAATGTAGTGACAGACAAGAAGGTTTCTTATCTTGAGACCTTGGGAGGTATGAGAAGTCCCACATCGCGTCATTAA 1629 0.4334 MVRALEQEQESYRSKLFHFRGMFENTGRHTKSLSIESASTLNPSDEDPATSRSQGSKPLNDSTEKAQRSRAIKEEIAAKEAKEKLLQEMEQMKERFAKLLLGEDMSGGGKGVSSALALSNAFTNLAAAVFGEQKRLEPMPPERKARWRKEIDWLLSVTDYVVEMVPTQQKAKDGSSMEIMTTRQRTDLHMNIPALRKLDNMLIDCLDNFKDQNEFYYVSKDADDADKDSSKRKNDDKWWLPTPKVPAEGLSDVARRFLQYQKDCMNQVLKAAMAINAQTLSEMEIPESYIESLPKNGRASLGDSIYRSITDDVFDPDQFLATMDMTSEHKILDLKNRIEASIVIWKRKMNQKDTKSAWGSAVSLEKRELFEERAETILILLKHRFPGLPQSSLDISKIQFNRDVGQAVLESYSRILESLAFTVLSRIEDVLHADHLTQNPSLAGRRSSVRNQVPKPEKCPTPREEVDKGGAETPGSMTLSDFMGWHGDQGDSDIKKDPLAATDDFYKDIDSGKPQKLPNVVTDKKVSYLETLGGMRSPTSRH* 543
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g2049 542 PANTHER RHO GUANYL-NUCLEOTIDE EXCHANGE FACTOR 87 542 - -
Lja3g2049 542 MobiDBLite consensus disorder prediction 441 475 - -
Lja3g2049 542 Gene3D PRONE domain, subdomain 2 284 400 - -
Lja3g2049 542 MobiDBLite consensus disorder prediction 38 71 - -
Lja3g2049 542 Coils Coil 72 102 - -
Lja3g2049 542 MobiDBLite consensus disorder prediction 38 62 - -
Lja3g2049 542 Gene3D PRONE domain, subdomain 1 93 435 - -
Lja3g2049 542 Pfam PRONE (Plant-specific Rop nucleotide exchanger) 87 438 IPR005512 GO:0005085
Lja3g2049 542 ProSiteProfiles PRONE domain profile. 79 444 IPR005512 GO:0005085
Lja3g2049 542 PANTHER ROP GUANINE NUCLEOTIDE EXCHANGE FACTOR 1 87 542 IPR038937 GO:0005085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g2049 Lja-Chr3 23822735 23825414 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g2049 - - gmx:100777496 853.973
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g3091 1 37616434 37619501 Lja3g2049 3 23822735 23825414 PCT