Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g2020 ATGGCACCCCATGGAGAGTCATTGGTTAAACCTTTCCCTATTACCAACAACAAATTATCTAAGCCACCAAAGCTCTCACCAGAGCACCTTCAACGAACGTTCTCCGACATCTCCTTCGAGCTTATAACCAAAGAAGCCATCAATGACCTGAAAGAACTCCCAACAATCTCCGAAGTCGAGGACGCGAAGTGCGAGTGCTGCGGCATGTCCGAGGAGTGCACGCCGGAGTACATCGACCGCGTTCGTGACAAGTTCATGGGCAAGTGGGTGTGCGGGCTGTGCGCAGAGGCGGTGAAAGAAGAGTTGGAGAAAAATGGAGGAAAAAAAGAAGAGGCTTTGAGTGCACACATGAATGCTTGTGTGAGGTTCAACAAGTATGGTAGGGCTTTCCCTGTTCTGTTCCAAGCTCAGGCCATGAAGGAGATGCTGAAGAGGAACAACCTCGATGGGAGAATTAGGGCTAAGTCTATTAGTCCAAGGGATAAAGGAGGGGTGAAGAATATTAAAGGATCTCTTGCTCGTAGTTCAAGTTGCATTCCAGCACTTACAAGAGCAATGAATGATATCAAAATAACCAACTAG 582 0.4759 MAPHGESLVKPFPITNNKLSKPPKLSPEHLQRTFSDISFELITKEAINDLKELPTISEVEDAKCECCGMSEECTPEYIDRVRDKFMGKWVCGLCAEAVKEELEKNGGKKEEALSAHMNACVRFNKYGRAFPVLFQAQAMKEMLKRNNLDGRIRAKSISPRDKGGVKNIKGSLARSSSCIPALTRAMNDIKITN* 194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g2020 193 PANTHER OS01G0745000 PROTEIN 1 190 IPR012876 -
Lja3g2020 193 PANTHER CASP-LIKE PROTEIN (DUF1677) 1 190 - -
Lja3g2020 193 Pfam Protein of unknown function (DUF1677) 59 145 IPR012876 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g2020 Lja-Chr3 23539222 23540308 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g2020 - - gmx:100816162 292.352
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g2020 3 23539222 23540308 Lja3g2020 3 23539222 23540308 ECH
Lja3g5086 3 93215305 93216518 Lja3g2020 3 23539222 23540308 PCT