Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lja3g2009 | ATGGATACGAATTTAAGCAGGAGCATAAGTAAGAGCTTGAGTAGGTCAAGCTGGAAGATGGAAGAAGTGTTTGCGAGTGGTAGATACTCTCGCAGGGCTTCTCATGTTGATGAAGATGAAGAAGCTCTGAAATGGGCTGCTATTGAGAAACTACCCACCTATGACAGGCTCAGAACCAGTATCATTCAAACGATTGCAGAGGGTGATCAGCCTCAAGGAGGAAACAGGATGCAGCACAAGGAAGTTGATGTCACAAAGCTTGATATGAATGATAGGCAACAGATCATTGACAAAATCTTCAAGGTTGCTGAAGAAGATAATGAAAAGTATCTCAGAAAGTTCAGAAACAGAACCGACAAGGTTGGGATCAGACTTCCAACTGTGGAAGTGAGGTTCAAGAATTTGACTATTGATGCTGATTCCTATGTTGGCAGCAGAGCTTTGCCAACCCTACCAAACTCTGCATTGAACATTATAGAATCACTTCTTGGCGCGTGTGGGATTAGTACCGCGAAGCAAACAAAGCTCACAATTCTTAAGAATATGTCTGGCATTGTTAAACCCGGAAGGATGGCCCTTTTGCTAGGTCCACCTTCTTCAGGGAAAACGACCCTTTTGTTGGCATTGGCTGGAAAATTGGATGAAGATTTGAGGGTAACAGGAGAAATCACTTACAATGGTCACAAGCTTAATGAATTTGTCCCTAGAAAAACTGCAGCATACATCAGTCAAAACGATGTTCATGTTGGAGAAATGACTGTGAAAGAAACCCTGGATTTCTCAGCTAGATGCCAAGGGGTTGGAACTAGATATGATTTACTGAGTGAGCTTGCTAGAAGAGAAAAGGAAGCTGGTATATTCCCAGAAGCAGAACTTGACCTTTTCATGAAGGCTACTGCTGTGAAAGGAACAGAAAGCAGTCTCATTACTGACTATACTCTCAAAATTTTGGGGCTTGATATTTGTAAGGACACCATTGTGGGAGATGATATGCACAGAGGTGTTTCTGGTGGCCAAAAGAAGCGTGTGACCACAGGTGAGATGATTGTGGGGCCCACCAAAACATTGTTTATGGATGAAATATCAACGGGTCTAGACAGCTCCACAACATTTCAGATTGTGAAATGCTTGCAGCAGATTGTGCACCTCACTGAAGGAACCATCTTGATGTCCCTTCTCCAACCTGCTCCTGAGACGTTCAATCTCTTTGATGACATTATTCTCATATCAGAGGGTCAGGTCGTATACCAGGGCCCACGTGAGCACATTGTCGAATTCTTTGAATCATGTGGCTTCCGCTGCCCTGAAAGAAAGGGAACAGCTGATTTCTTGCAAGAGGTTACTTCGAGGAAGGACCAAGAACAATACTGGTCAGACAAGAACAGGCCATACCGTTACGTGACAGTGACTGAGTTTGCAAACAAGTTCAAGCGATTCCACGTTGGTGTTCAGCTAGAGAGCGAGTTATCAGTGCCATTCGACAAGTCAAGTGCACACAAAGCAGCACTAGTTTACACCAAAAACTCTGTTCCCACAAAGGATATTTTCAAAGCATGTTGGGACAAGGAGTGGCTTCTGATCCAGAGGAACTCCTTCGTCTACATTTTCAAGTCAGTGCAAATCTGCATCCTCGCCTTGATCTCCGCAACGCTGTTCTTGAGGACCGAGATGAAACAGGGCAATGAAGGTGATGCCTCGCTCTATGTTGGTGCAATCTTGTTCGGCACTGTCATGAACATGTTCAATGGTTTTGCTGAGCTTGCACTCACCATTCAGAGGCTTCCTGTGTTTTACAAGCACAGGGATCACCTTTTCCACCCTGCTTGGACTTACACTGTCCCTAATTTCCTGTTGAGGATCCCCATTTCTATATTTGAGTCTCTTGTTTGGGTGGCTATTACCTACTACACTACAGGGTTTGCACCTGAAGCTAGCAGGTTCTTCAAGCAACTGTTGGTGGTGTTTCTTATCCAACAAATGGCAGCGGGGATGTTTAGGCTCATTTCTGGAGTCTGCAGAACAATGATTATTGCTAATACTGGTGGAGCTCTTATGCTCCTTCTTGTTTTTCTACTAGGAGGTTTCCTCCTTCCAAAACGTGCAATTCCTGACTGGTGGGTGTGGGCCTACTGGATTTCACCCTTGTCATATGCTTTCAATTCCTTGACTGTGAATGAACTGTTAGCTCCAAGGTGGATGCATCCGCAGAGCTCTACGGATAAAACTACCACATTGGGTCTGAAAGTATTGGCGAACTTCGATGTTTATGATACAGAGGATTGGTTCTGGATAGGTTCCGCAGCTCTTGTGGGTTGGATCGTTTTGTACAACGTTCTCTTCACCCTTGCGCTTATGTACCTTAATCCTCTTGGAAAGAAACAAGCAATTATATCTGAAGAAGATGCAAGCGAAATGGATCTTGAAGGAGACATCACTGAACAACCGAGACTTGTAAGGCCTCAGTCCAAGAGAGAGTCAGTGCTCCGATCACTATCTACTGCTGATGGAAACAATGCAAGAGAAGTGGCAATGCAGAGAATGAGTAGCCAAGCTAATAACGGATTAAGAAATACAGATTCAGGCACTGAAGGTGCCCCAAGAAAAGGAATGCTTCTACCTTTTCAACCACTTGCGATGTCCTTTGACTCTGTTAATTACTTCGTGGATATGCCTGCAGAAATGAAAGCGCAAGGAGTGGCAGAAGATAGGCTACAACTTCTTAGGGAAGTAACCAGTTCCTTTAGGCCTGGAGTTCTTACTGCACTAATGGGAGTTAGTGGAGCTGGGAAGACAACACTAATGGATGTTTTAGCTGGAAGAAAGACCGGTGGCTACATTGAAGGAGATGTTAGAATCTCTGGGTTCCCTAAGAACCAAGAAACCTTTGCAAGAGTTTCTGGTTATTGTGAACAAACTGATATTCACTCACCCCAAGTTACTATCAGAGAATCATTGCTTTACTCTGCCTTCCTTAGGTTACCAACAGAAGTCAGTAATGAGGAGAAGACACAATTTGTGGATCAAGTGATGGATTTGGTAGAACTTGTGAGTCTCAAGGATGCCATTGTGGGGCTTCCAGGAGTTACAGGGTTGTCAACCGAACAGAGAAAGAGGCTGACAATCGCTGTTGAGCTTGTTGCTAATCCTTCAATCATTTTCATGGATGAACCAACTTCAGGTCTAGATGCTAGAGCAGCAGCTATTGTTATGAGGGCTGTCAGAAACACTGTGGATACTGGAAGAACAGTTGTTTGCACAATTCACCAGCCTAGCATTGATATCTTTGAAGCCTTTGATGAGCTCATTTTGATGAAAAGAGGAGGGCAACTGATCTACGCAGGACCTTTAGGTCGGAATTCGCACAAGATTGTAGAATACTTTGAGGAAATTCCAGGGGTACCAAAAATCAAGGAAATGTACAACCCAGCAACATGGATGCTTGAAGTCAGTTCCGTTGCTGCTGAAGTCCGGCTTGGAATGGACTTCGCTGAGTACTACAAGACATCAGCTTTGGCTCAGCGAAACAAAGCTCTTGTGAAGGAGTTGAGCGTGCCCCCACCAGGAGCCAATGATTTGTATTTTCCCACTAAGTTCTCCCAATCCACAGTGGGGCAATTTAAATCATGTCTGTGGAAGCAGTGGCTGACATACTGGAGGAGTCCTGATTATAATCTAGTCAGGTTTTCTTTCACCTTGCTCGCTGCCATCATGGTTGGTTCTGTTTTCTGGAAAATTGGCAAAAACACGGAGAGCTCTACCGACTTGAACATGGTCATAGGAGCATTGTATGCTGCTGTTATTTTTGTTGGAGTTAACAACTGCCAAACTGTTCAACCAGTTGTGGCCATTGAAAGAACTGTATTCTATAGAGAAAGGGCTGCTGGAATGTATGCTCCTCTGCCTTATGCCATAGCACAGGTTTTCACCGAATTACCATATGTGTTTGCCCAAACTACGTTTTACTCACTCATTGTGTATGCTATGGTGAGCTTCGATTGGAAAGTGGAGAAGTTCTTCTGGTTCTTCTTTGTCAGCTTCTTCTCCTTCCTGTACTTCACATATTACGGTATGATGACCGTGTCCATCACACCAAATCACCAAGTGGCATCAATCTTTGCAGCAGCGTTCTACGGACTCTTCAACCTCTTCTCTGGCTTCTTTATCCCAAGACCTAAAATTCCCGGATGGTGGGTATGGTACTACTGGATCTGCCCTGTAGCATGGACCGTGTATGGATTGATCGTTTCCCAATATAGAGATATAACTAGTCCCATCTCTGTGGCTGGGAGTACTCAGAATTTCACTGTCAAGGGATATATTGAGGACTATTATGGCTTTAAACCTGACTTCATGGGTCCAGTTGCTGCAGTTTTGGTCCTTTTCACTTGTTTCTTTGCCTTTGTATTTGCCGTCTGCATCAAGGTCCTGAACTTCCAATCCAGATAA | 4446 | 0.4422 | MDTNLSRSISKSLSRSSWKMEEVFASGRYSRRASHVDEDEEALKWAAIEKLPTYDRLRTSIIQTIAEGDQPQGGNRMQHKEVDVTKLDMNDRQQIIDKIFKVAEEDNEKYLRKFRNRTDKVGIRLPTVEVRFKNLTIDADSYVGSRALPTLPNSALNIIESLLGACGISTAKQTKLTILKNMSGIVKPGRMALLLGPPSSGKTTLLLALAGKLDEDLRVTGEITYNGHKLNEFVPRKTAAYISQNDVHVGEMTVKETLDFSARCQGVGTRYDLLSELARREKEAGIFPEAELDLFMKATAVKGTESSLITDYTLKILGLDICKDTIVGDDMHRGVSGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTFQIVKCLQQIVHLTEGTILMSLLQPAPETFNLFDDIILISEGQVVYQGPREHIVEFFESCGFRCPERKGTADFLQEVTSRKDQEQYWSDKNRPYRYVTVTEFANKFKRFHVGVQLESELSVPFDKSSAHKAALVYTKNSVPTKDIFKACWDKEWLLIQRNSFVYIFKSVQICILALISATLFLRTEMKQGNEGDASLYVGAILFGTVMNMFNGFAELALTIQRLPVFYKHRDHLFHPAWTYTVPNFLLRIPISIFESLVWVAITYYTTGFAPEASRFFKQLLVVFLIQQMAAGMFRLISGVCRTMIIANTGGALMLLLVFLLGGFLLPKRAIPDWWVWAYWISPLSYAFNSLTVNELLAPRWMHPQSSTDKTTTLGLKVLANFDVYDTEDWFWIGSAALVGWIVLYNVLFTLALMYLNPLGKKQAIISEEDASEMDLEGDITEQPRLVRPQSKRESVLRSLSTADGNNAREVAMQRMSSQANNGLRNTDSGTEGAPRKGMLLPFQPLAMSFDSVNYFVDMPAEMKAQGVAEDRLQLLREVTSSFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDVRISGFPKNQETFARVSGYCEQTDIHSPQVTIRESLLYSAFLRLPTEVSNEEKTQFVDQVMDLVELVSLKDAIVGLPGVTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDTGRTVVCTIHQPSIDIFEAFDELILMKRGGQLIYAGPLGRNSHKIVEYFEEIPGVPKIKEMYNPATWMLEVSSVAAEVRLGMDFAEYYKTSALAQRNKALVKELSVPPPGANDLYFPTKFSQSTVGQFKSCLWKQWLTYWRSPDYNLVRFSFTLLAAIMVGSVFWKIGKNTESSTDLNMVIGALYAAVIFVGVNNCQTVQPVVAIERTVFYRERAAGMYAPLPYAIAQVFTELPYVFAQTTFYSLIVYAMVSFDWKVEKFFWFFFVSFFSFLYFTYYGMMTVSITPNHQVASIFAAAFYGLFNLFSGFFIPRPKIPGWWVWYYWICPVAWTVYGLIVSQYRDITSPISVAGSTQNFTVKGYIEDYYGFKPDFMGPVAAVLVLFTCFFAFVFAVCIKVLNFQSR* | 1482 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lja3g2009 | 1481 | Pfam | ABC-2 type transporter | 1205 | 1418 | IPR013525 | GO:0016020|GO:0140359 | |
| Lja3g2009 | 1481 | Pfam | ABC-2 type transporter | 516 | 727 | IPR013525 | GO:0016020|GO:0140359 | |
| Lja3g2009 | 1481 | CDD | ABCG_PDR_domain2 | 876 | 1114 | IPR034003 | - | |
| Lja3g2009 | 1481 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 902 | 1115 | IPR027417 | - | |
| Lja3g2009 | 1481 | PANTHER | ATP-BINDING CASSETTE TRANSPORTER | 9 | 1481 | - | - | |
| Lja3g2009 | 1481 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 175 | 436 | IPR027417 | - | |
| Lja3g2009 | 1481 | ProSiteProfiles | ATP-binding cassette, ABC transporter-type domain profile. | 163 | 436 | IPR003439 | GO:0005524 | |
| Lja3g2009 | 1481 | CDD | ABCG_PDR_domain1 | 175 | 418 | IPR034001 | - | |
| Lja3g2009 | 1481 | Pfam | ABC-2 type transporter | 394 | 468 | IPR043926 | GO:0140359 | |
| Lja3g2009 | 1481 | Pfam | ABC-2 type transporter | 1088 | 1148 | IPR043926 | GO:0140359 | |
| Lja3g2009 | 1481 | Pfam | ABC transporter | 179 | 361 | IPR003439 | GO:0005524 | |
| Lja3g2009 | 1481 | Gene3D | - | 894 | 1127 | IPR027417 | - | |
| Lja3g2009 | 1481 | Pfam | Plant PDR ABC transporter associated | 732 | 797 | IPR013581 | - | |
| Lja3g2009 | 1481 | PANTHER | DRUG RESISTANCE TRANSPORTER-LIKE ABC DOMAIN PROTEIN | 9 | 1481 | - | - | |
| Lja3g2009 | 1481 | Pfam | ABC transporter | 907 | 1059 | IPR003439 | GO:0005524 | |
| Lja3g2009 | 1481 | ProSiteProfiles | ATP-binding cassette, ABC transporter-type domain profile. | 879 | 1131 | IPR003439 | GO:0005524 | |
| Lja3g2009 | 1481 | Gene3D | - | 166 | 478 | IPR027417 | - | |
| Lja3g2009 | 1481 | Pfam | ABC-transporter N-terminal | 91 | 153 | IPR029481 | - | |
| Lja3g2009 | 1481 | SMART | AAA_5 | 188 | 413 | IPR003593 | - | |
| Lja3g2009 | 1481 | SMART | AAA_5 | 916 | 1108 | IPR003593 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Lja3g2009 | Lja-Chr3 | 23274515 | 23283933 | Wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lja3g2009 | K08711 | - | gmx:100798588 | 2534.98 |
Event-related genes