Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g1978 ATGTCGCCAAAGCGAGGGCTTCACAAGGGATTCGTTCTCCTCTGCGTTTTTGCGTCAGTGATTTTCTTCCTCGGCCCAGGGCTTCACGCTTTTGATCAAGATGATATTTCATCTGTTCCAAGTAAACAGGTTGCAAAATGGAGAGAATGGCAGACATTACAAGACCTTAAATCACTTTTTTCGAAAGAGGTTCTTGATCTTATTGCATCCAGCACAGATGATATGGGGCCTTTGAGTCTTGACAATTTCAGAAAAAAATTATCTGCTTCATGGAGAGTTGTTGGATCAGAGACTTCAAATGCTACATATGAGCTAAACCAACCAACAACATATGTCAGACAAGGAAAACCAAAGGTGACGGAAGGCCAGTCTTCAGATGATGGTCTGGCTCAGTGGACACATAGTCCAGTACAGCAAGTCCGAAGGCAATTATTAGAGAAAAGGCGGGAAAAGCGTGCTTTTGAATTGGTGAAAATGGATAATGAAGTAATTGTAAAACTTGAAAATGAAGCAATTGAACGCTCAGGATCTGTTGAGTCAGCTGTTCTGGGTAAATACAGTATTTGGAGGAAAGAAATTGAAAATGAGAATGCTGATTCCACTGTTCGGTTGATGCGGGACCAGATCATTATGGCTAAGGTATATGTGAGTATTGCAAAGATGAAGAACAAGCTTGGACTATACCAAGAACTGCAATCTCGGCTCAAAGAGAGTCGACGTGCTTTAGGTGATGCAAGTTCTGATGCAGATCTAAATCACAGTGCACATGAAAAAATAAAGGCTATGGGCCAAGTTCTGTCAAAAGCAAGAACGCAATTGTATGACTGCAAGTTGGTCACTGAAAAACTGAGAGCAATGCTGCAAACCGCTGATGAGCAAGTTAGAAGCTTGAAGAAACAGAGCACATTCCTCAGTCAGTTGGCTGCCAAGACCATACCAAATGGAATTCATTGCTTATCTATGCGCCTCACCATAGATTACTACCTTCTTCCTCCTGAAAAGAGAAAGTTCCCTAGGATTGAGAACTTGGAGAATCCCAGTCTTTATCATTATGCACTGTTTTCAGACAATGTCTTGGCCGCATCTGTTGTTGTCAACTCCACTATTATGAATGCAAAGGATCCTTCAAAGCATGTTTTTCACCTTGTTACCGATAAACTAAATTTTGGAGCCATGAACATGTGGTTTCTTTTGAACCCTCCTGGAAAAGCTACAATCAATGTTGAAAATGTTGATGATTTCAAGTGGTTGAACTCATCCTACTGCCCTGTCCTACGGCAGCTTGAATCTGCAACAATGAAAGAGTATTATTTCAAGGCAGGCCATCCAACCACACTCTCTTCTGGTGCTTCCAATCTGAAATATAGAAACCCAAAATATCTCTCAATGCTCAACCATCTCAGGTTCTATCTTCCACAAGTTTATCCAAAATTGGATAAAATCCTTTTTCTGGATGATGACATTGTTGTTCAGAAGGATTTAACTGGATTGTGGAGGGTGAATCTTCAGGGGAAAGTAAATGGTGCAGTTGAAACATGTGGTGAGAGCTTTCACCGATTTGACAAGTATCTTAACTTTTCAAATCCGCATATTGCGAGAAATTTTGATCCAAATGCTTGTGGTTGGGCATACGGGATGAACATGTTTGATCTGAAGGTGTGGAAACAGAAGGATATCACTGGCATATATCACAAGTGGCAGAATATGAATGAAGATAGGGTGCTGTGGAAGCTGGGAACATTACCTCCAGGGCTAATGACATTCTATGGGATGACACATCCGCTAGAAAAATCTTGGCATGTACTTGGTTTGGGTTATAATCCTAATGTTGATCGAAAAGATATCGAGAATGCAGCAGTTGTGCACTACAATGGTAATATGAAGCCGTGGTTAGATATTGCGATGACAAAGTATCGGCGTTACTGGACTAAATATGTCAAATACAATCATCCCTATCTTCGGAACTGTAAGTTAAATGAATAG 1983 0.408 MSPKRGLHKGFVLLCVFASVIFFLGPGLHAFDQDDISSVPSKQVAKWREWQTLQDLKSLFSKEVLDLIASSTDDMGPLSLDNFRKKLSASWRVVGSETSNATYELNQPTTYVRQGKPKVTEGQSSDDGLAQWTHSPVQQVRRQLLEKRREKRAFELVKMDNEVIVKLENEAIERSGSVESAVLGKYSIWRKEIENENADSTVRLMRDQIIMAKVYVSIAKMKNKLGLYQELQSRLKESRRALGDASSDADLNHSAHEKIKAMGQVLSKARTQLYDCKLVTEKLRAMLQTADEQVRSLKKQSTFLSQLAAKTIPNGIHCLSMRLTIDYYLLPPEKRKFPRIENLENPSLYHYALFSDNVLAASVVVNSTIMNAKDPSKHVFHLVTDKLNFGAMNMWFLLNPPGKATINVENVDDFKWLNSSYCPVLRQLESATMKEYYFKAGHPTTLSSGASNLKYRNPKYLSMLNHLRFYLPQVYPKLDKILFLDDDIVVQKDLTGLWRVNLQGKVNGAVETCGESFHRFDKYLNFSNPHIARNFDPNACGWAYGMNMFDLKVWKQKDITGIYHKWQNMNEDRVLWKLGTLPPGLMTFYGMTHPLEKSWHVLGLGYNPNVDRKDIENAAVVHYNGNMKPWLDIAMTKYRRYWTKYVKYNHPYLRNCKLNE* 661
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g1978 660 Pfam Glycosyl transferase family 8 318 634 IPR002495 GO:0016757
Lja3g1978 660 Coils Coil 280 300 - -
Lja3g1978 660 Coils Coil 228 248 - -
Lja3g1978 660 CDD GT8_like_1 349 647 - -
Lja3g1978 660 SUPERFAMILY Nucleotide-diphospho-sugar transferases 349 657 IPR029044 -
Lja3g1978 660 PANTHER GALACTURONOSYLTRANSFERASE 4-RELATED 10 660 IPR029993 GO:0047262
Lja3g1978 660 PANTHER HEXOSYLTRANSFERASE 10 660 - -
Lja3g1978 660 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 351 655 IPR029044 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g1978 Lja-Chr3 22762509 22768539 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g1978 11 660 Glycosyltransferase AT3G61130 75.269 0.0 1020
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g1978 K13648 - gmx:100811181 1120.15
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g3169 1 38900796 38906264 Lja3g1978 3 22762509 22768539 PCT