Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g3169 ATGGCGCTCAACAACAACAGGAGCAGCAGTAAGGGATCCCCTTTTCCCCTTCTGGGTTTCGTTCTCCTCTGCCTTCTCGCGCCCCTCATTTTCTTCTTTACAACGCACCTTCACACTCTTCAGGATCAAGATGATATTTTAGCTGGTACAAGCAAACAGATTGGCAAATGGAGAGATTGGCAGGCATTACAGGAGATTAAATCTCTTTTTCCAAAAGAAGTTCTTGATGTTATTGTGTCCAGCACAAATGATATGGGACCTTTGAGTCTTGAGAATTTCAGAAAGAATATTTCTGCATCATGGAGAGTTGTTGGGTTAAAGACTTCAAATTCGACATATCAGCTAAACCAACCAGCCACACATCTTAGACAGGAAAAACAAAAGGGGAAGGAAGGAAGATCTTCAGTTGGTCTTGCTGAATGGACTGATAGTCCTACACGGATAGCGAGAAGACAATTAATAGAGAAAAGAATGGAAAAGCGTGCTGCTGAGTTGGTAAAACAGGATGATGAAGTAGTTGTAAAACTTGAAGATTCAGCTATTCAACGCTCAAAATCAGTTGATTCAGCAATTCTAGGTAAATACAACATATGGAGGAAAGAAAATGAGAACGAAAATCCTGATGCTACTGTTCGGTTGATGCGAGATCAAATAATTATGGCTAGGGTATACTTGGGTCTTGCAAAGATGAAGAACAAGCTTCAACTGTACCAAGAACTGCAATCTCAGATTAAAGAGAGTCAACGTGCTTTAGGTGATGCAACTTCTGATGCTGACCTACATCACAGTGAACATGAAAAAATCAAAGCTATGGGCCAAGTTCTTTCTAAAGCAAAAGAGCAATTGTATGACTGCAAGTTGGTTACTGGGAAATTGAGGGCAATGCTACAAACGGCCGATGAGCAAGTTAGGAGCTTGAAGAAGCAAAGCACATTCCTCAGTCAATTGGCTGCCAAGACCATACCAAATGGAATTCACTGCTTATCTATGCGCCTCACAATAGATTACTACCTCCTTCCTCTTGAAAAGAGAAAGTTCCCTAGGAGTGAGAATTTGGAGAATCCTAGTCTTTATCATTATGCCCTGTTCTCAGACAATGTTTTGGCTGCGTCGGTTGTTGTCAACTCAACTGTTTTGAATGCCAAGGATCCTTCAAAGCATGTGTTTCATCTTGTTACCGATAAACTAAATTTTGGAGCCATGAACATGTGGTTCTTGTTGAATCCTCCTGGAAAAGCTACAATCCATATCGAAAATGTTGATGACTTCAAGTGGTTGAACTCATCCTACTGCCCAGTCTTGAGGCAGCTTGAATCTGCAACTATGAAAGAGTATTATTTCAAGGCAGGCCATCCAACCACTGGTGCTTCTAATCTGAAGTACAGAAATCCAAAATATCTATCAATGCTCAACCACCTGAGGTTCTATCTTCCACAAGTTTATCCAAAACTGGATAAGATTCTTTTTCTTGATGATGACATTGTGGTTCAGAAGGATTTGACTGGATTATGGGCTGTGAATCTCAATGGAAAAGTAAATGGTGCAGTTGAAACATGTGGTGAGAGCTTTCACCGATTTGACAAGTATCTCAACTTTTCGAATCCGCACATTGCAAAAAATTTCGATCCAAATGCTTGTGGTTGGGCATACGGGATGAACATGTTTGATTTGAAGGTGTGGAAAAAGAAAGACATCACTGGCATATATCACAGGTGGCAGAATTTGAATGAAGACAGGGTGCTTTGGAAGCTAGGGACATTACCTCCTGGACTAATGACATTCTATGGATTAACACATCCACTAAATAAATCATGGCATGTACTGGGTTTGGGTTACAATCCAAGTGTAGATCGTTCAGAGATTGAAAATGCAGCAGTTGTACACTACAATGGTAATATGAAGCCATGGTTAGAGATAGCCATGACAAAGTATCGTTCTTACTGGACCAAATATGTCAAGTATAATCATCCCTATCTCAGGAACTGTAAGTTAAATGAATGA 2001 0.4033 MALNNNRSSSKGSPFPLLGFVLLCLLAPLIFFFTTHLHTLQDQDDILAGTSKQIGKWRDWQALQEIKSLFPKEVLDVIVSSTNDMGPLSLENFRKNISASWRVVGLKTSNSTYQLNQPATHLRQEKQKGKEGRSSVGLAEWTDSPTRIARRQLIEKRMEKRAAELVKQDDEVVVKLEDSAIQRSKSVDSAILGKYNIWRKENENENPDATVRLMRDQIIMARVYLGLAKMKNKLQLYQELQSQIKESQRALGDATSDADLHHSEHEKIKAMGQVLSKAKEQLYDCKLVTGKLRAMLQTADEQVRSLKKQSTFLSQLAAKTIPNGIHCLSMRLTIDYYLLPLEKRKFPRSENLENPSLYHYALFSDNVLAASVVVNSTVLNAKDPSKHVFHLVTDKLNFGAMNMWFLLNPPGKATIHIENVDDFKWLNSSYCPVLRQLESATMKEYYFKAGHPTTGASNLKYRNPKYLSMLNHLRFYLPQVYPKLDKILFLDDDIVVQKDLTGLWAVNLNGKVNGAVETCGESFHRFDKYLNFSNPHIAKNFDPNACGWAYGMNMFDLKVWKKKDITGIYHRWQNLNEDRVLWKLGTLPPGLMTFYGLTHPLNKSWHVLGLGYNPSVDRSEIENAAVVHYNGNMKPWLEIAMTKYRSYWTKYVKYNHPYLRNCKLNE* 667
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g3169 666 CDD GT8_like_1 358 653 - -
Lja1g3169 666 MobiDBLite consensus disorder prediction 119 139 - -
Lja1g3169 666 SUPERFAMILY Nucleotide-diphospho-sugar transferases 358 663 IPR029044 -
Lja1g3169 666 Pfam Glycosyl transferase family 8 327 640 IPR002495 GO:0016757
Lja1g3169 666 PANTHER GALACTURONOSYLTRANSFERASE 4-RELATED 8 666 IPR029993 GO:0047262
Lja1g3169 666 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 360 661 IPR029044 -
Lja1g3169 666 Coils Coil 230 257 - -
Lja1g3169 666 PANTHER HEXOSYLTRANSFERASE 8 666 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g3169 Lja-Chr1 38900796 38906264 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g3169 2 666 Glycosyltransferase AT3G61130 72.945 0.0 1023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g3169 K13648 - gmx:100798073 1171.38
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g3169 1 38900796 38906264 Lja1g3169 1 38900796 38906264 ECH
Lja1g3169 1 38900796 38906264 Lja3g1978 3 22762509 22768539 PCT