Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g1952 ATGGGTCACGTGAACCTCCCACCTTCCAAGCGCAGCAACCCGCGTCAATGGCGGCTGTTAGACCTTGTCTCCGCCGCGTTCTTCGGCCTCGTCTTGCTCTTCTTCATTCTGGTCTTCACTCCTCTGGGTGATCCCCTCGCCGCCTCTGGGCGCCAGACGCTGCTTCAGTCGGCCTCCGATCCGGGGCAGCGTCAGCGCCTCGTGGCGGCGATTGAGTCGGGGCAGCCCCGAGTGATTGAGGCGTGCCCCGCCGAGGCTGTGGACCATATGCCGTGTGAGGATCCGAGGCTGAATAGTCAGCTCAGTAGAGATATGAATTATTACAGAGAGAGGCATTGCCCTCCAACGGAGAACACGCCACTTTGCCTCATTCCACCGCCTAATGACTACAAGATTTCGGTGCAGTGGCCTGAGAGCTTGCACAAGATATGGCACAGCAACATGCCACACAACAAGATTGCTGACCGGAAAGGTCACCAGGGATGGATGAAACTTGAAGGACCCCACTTCATTTTCCCTGGAGGTGGCACAATGTTCCCAGATGGGGCAGAGCAGTATATTGAAAAACTTGGTCAATACATTCCAATGAATGGTGGTGCTCTGAGGACTGCTCTTGATATGGGGTGTGGGGTTGCCAGTTTTGGAGGATTTTTACTTGCTCAGAACATTTTAACCTTGTCTTTTGCGCCTAGGGATTCACATAAATCACAGATACAATTTGCTCTCGAAAGAGGAATACCAGCTTTTGTTGCCATGCTTGGTACTCGCAGACTCCCATTTCCAGCATTTGGCTTTGACTTAGTCCATTGTTCTCGATGTTTAATCCCTTTTACAGCCTACAATGCAACTTATTTCCTTGAAGTGGACAGATTACTTCGACCAGGTGGATATTTAGTCATCTCTGGTCCCCCTGTTCAGTGGCCTAAACAGGATAAAGAATGGTCTGATCTCCAGGCTGTGGCAAGAGCTTTGTGTTATGAACTGATTGCTGTGGATGGTAACACAGTGATCTGGAAAAAGCCAGCAGGGGATATGTGTCTCCCTAACCAAAATGACTTTGGTCTTAAGTTATGTGATGATTCAGATGATCCAAGTTCTGCTTGGTACTTCAAATTGAAGAAATGTGTCAGTAGGACATCTTCTGTCAAAGGAGAATATTCTATTGGGGTGATCCCCAAGTGGCCGGAAAGGCTAACTGCTCCACAGCCTAGGTCCACACTACTGAAAAATGGTGCTGATGTATATCAGGCTGACACTAGGCGATGGTTAAGGAGGGTTGCGTACTATAAGCATTCTCTAAACATGAAGTTGGGGACTTCATCTGTACGCAACGTCATGGACATGAATGCATTCTTTGGGGGTTTTGCGGCAGCATTAATATCTGATCCTGTGTGGGTAATGAATGTAGTTCCAGCTCGCAAGCCGTCCACTCTTGATGTAATCTTTGACAGAGGGCTTATTGGAGTGTATCATGATTGGTGTGAACCTTTCTCAACATATCCTCGTACCTATGATCTGATCCACGTGGCCAGCATTGAATCACTTATAAAGGATCCAGCCTCTGGTAAAAGCAGATGCAACCTTGTTGATTTGATGGTGGAAATAGACAGAATGATGCGCCCAGAAGGCACTGTTGTGGTGAGGGATACTCCTGAAGTACTTGACAAAGTTGCTCGTATTGCGCAAGCAGTGAGATGGGAGCATACCGTATATGATAAAGAGCCTGAATCACATGGCAGAGACAAAATCTTAGTTGCAACCAAGACCTTTTGGAAGCTGTAA 1782 0.4809 MGHVNLPPSKRSNPRQWRLLDLVSAAFFGLVLLFFILVFTPLGDPLAASGRQTLLQSASDPGQRQRLVAAIESGQPRVIEACPAEAVDHMPCEDPRLNSQLSRDMNYYRERHCPPTENTPLCLIPPPNDYKISVQWPESLHKIWHSNMPHNKIADRKGHQGWMKLEGPHFIFPGGGTMFPDGAEQYIEKLGQYIPMNGGALRTALDMGCGVASFGGFLLAQNILTLSFAPRDSHKSQIQFALERGIPAFVAMLGTRRLPFPAFGFDLVHCSRCLIPFTAYNATYFLEVDRLLRPGGYLVISGPPVQWPKQDKEWSDLQAVARALCYELIAVDGNTVIWKKPAGDMCLPNQNDFGLKLCDDSDDPSSAWYFKLKKCVSRTSSVKGEYSIGVIPKWPERLTAPQPRSTLLKNGADVYQADTRRWLRRVAYYKHSLNMKLGTSSVRNVMDMNAFFGGFAAALISDPVWVMNVVPARKPSTLDVIFDRGLIGVYHDWCEPFSTYPRTYDLIHVASIESLIKDPASGKSRCNLVDLMVEIDRMMRPEGTVVVRDTPEVLDKVARIAQAVRWEHTVYDKEPESHGRDKILVATKTFWKL* 594
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g1952 593 PANTHER PMT16, PUTATIVE-RELATED 15 592 - -
Lja3g1952 593 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 420 568 IPR029063 -
Lja3g1952 593 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 110 314 IPR029063 -
Lja3g1952 593 Gene3D Vaccinia Virus protein VP39 177 332 IPR029063 -
Lja3g1952 593 Pfam Putative S-adenosyl-L-methionine-dependent methyltransferase 88 588 IPR004159 GO:0008168
Lja3g1952 593 PANTHER SAM-DEPENDENT METHYLTRANSFERASE 15 592 IPR004159 GO:0008168
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g1952 Lja-Chr3 22445283 22450592 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g1952 K23872 - gmx:100778824 1058.51
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g1952 3 22445283 22450592 Lja3g1952 3 22445283 22450592 ECH
Lja1g3153 1 38544414 38551346 Lja3g1952 3 22445283 22450592 PCT