Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g3153 ATGGGTACTTCCAATTTGCTATCTTCCAAGCGCCACGGCAATACCACACGTCAATGGCGGCTTCTGGACTTAATCACCGGAGCGTTCTTCCTCTTGGTGCTTCTCTTCATTGTTCTCGTCTTCACCACCCTCGGCGACTCCCTCGCCGCCTCCGGCCGCCGTACACTGCATCTCTCAACCGGAGACCCGCAGCAGCGAGGCCGCATCGTGGCGGCGATCGAGGAAGGGAAGTGGCCCGGGAGGACCCTCGAGGCGTGTATTGTCGATGATGTGGACCATATGCCGTGTGAGGATCCGAGGTTGAATAGCCAGCTCAGTAGGGAGATGAACTACTACAGGGAGAGGCATTGCCCAAGGCCGGAGGATACGCCACTCTGCTTGATTCCGCCGCCGAAGGGGTACCGGATTTCGGTGCAGTGGCCGGAGAGTATGCACAAGATATGGTACAAAAACATGCCACACAGCAAGATTGCTGACAGGAAAGGTCATCAGGGATGGATGAAGCTAGAAGGTCAACACTTTATATTCCCCGGTGGTGGTACAATGTTTCCAGATGGAGCAGAGCAATATATTGAAAAACTTGGTCAATACATTCCAATGAGTGGAGGTGTTCTGAGGACTGCTCTTGACATGGGGTGTGGGGTTGCTAGTTTTGGAGGATATTTACTGACTCAAAATATTTTGACCATGTCTTTTGCTCCAAGAGATTCACATAAATCACAAATACAATTTGCCCTGGAAAGAGGAATACCAGCTTTCGTTGCTATGCTTGGCACTCGCAGACTCCCATTTCCTGCATTTGGATTTGACTTAGTTCATTGTTCTCGGTGTTTGATCCCATTTACAGCCTACAATGCAACTTATTTCATGGAAGTGGATAGATTACTTCGCCCTAGTGGATATTTAGTCATCTCTGGTCCCCCTGTTCAGTGGCCTAAACAAGAGAAAGAATGGTCCGATCTCCAGGCTGTGGCAAAAGCCTTGTGTTATGAACTTATTGCTGTAGAAGGTAACACTGTGATCTGGAAGAAGCCTGCAGAAGATACATGTCTTCCCAACGAAAATGAATTTAGTCTCGAGTTGTGTGATCATTCGGATGACCCAAATCAAGCTTGGTACTTCAAGTTGAACAAATGTGTCAGTAGGACATCTTCGGTCAAAGGAAATTATGCTATTGGAAAGATTTCCAAATGGCCAGAGAGGCTAACTGCTGTACCTCCAAGATCAGCAGTCCTGAAAAATGGCATTGATGTGTATGAGGCGGACACTGGACGCTGGTCGAGGAGGGTTGCATACTATAAGAATTCTCTAAATATTAAATTGGGGACTCGATCTGTTCGCAATGTCATGGACCTGAATGCATTATTTGGGGGTTTTGCAGCAGCCTTAAAATCTGATCCTGTCTGGGTAATGAATGTTGTTCCAGCTCAAAAGCCACCCACTCTTGATGTGATATATGACAGAGGCCTTATTGGAGTCTATCATGATTGGTGTGAACCTTTTTCGACATACCCTCGTAGTTATGATCTGATCCATGTGGACAGCATTGATTCACTAGTAAAAGATCCAGATTCTGGTAAAAGCAGATGTAGTATTGTGGATTTGATGGTGGAAATTGATCGAATGTTGCGCCCGGAGGGAACTGTTGTGGTGAGGGATACCCCTGAAGTAATTAACAAAGTAGCTTCCATTGCTCGTGCAGTTAGGTGGAAGCCTATCATTCATGATAAAGAACCGGACTCACATGGCAGGGAAAAAATTCTAGTTGCTACCAAGACATTCTGGAAGCTCTAA 1794 0.4666 MGTSNLLSSKRHGNTTRQWRLLDLITGAFFLLVLLFIVLVFTTLGDSLAASGRRTLHLSTGDPQQRGRIVAAIEEGKWPGRTLEACIVDDVDHMPCEDPRLNSQLSREMNYYRERHCPRPEDTPLCLIPPPKGYRISVQWPESMHKIWYKNMPHSKIADRKGHQGWMKLEGQHFIFPGGGTMFPDGAEQYIEKLGQYIPMSGGVLRTALDMGCGVASFGGYLLTQNILTMSFAPRDSHKSQIQFALERGIPAFVAMLGTRRLPFPAFGFDLVHCSRCLIPFTAYNATYFMEVDRLLRPSGYLVISGPPVQWPKQEKEWSDLQAVAKALCYELIAVEGNTVIWKKPAEDTCLPNENEFSLELCDHSDDPNQAWYFKLNKCVSRTSSVKGNYAIGKISKWPERLTAVPPRSAVLKNGIDVYEADTGRWSRRVAYYKNSLNIKLGTRSVRNVMDLNALFGGFAAALKSDPVWVMNVVPAQKPPTLDVIYDRGLIGVYHDWCEPFSTYPRSYDLIHVDSIDSLVKDPDSGKSRCSIVDLMVEIDRMLRPEGTVVVRDTPEVINKVASIARAVRWKPIIHDKEPDSHGREKILVATKTFWKL* 598
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g3153 597 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 430 559 IPR029063 -
Lja1g3153 597 Gene3D Vaccinia Virus protein VP39 182 343 IPR029063 -
Lja1g3153 597 Pfam Putative S-adenosyl-L-methionine-dependent methyltransferase 92 592 IPR004159 GO:0008168
Lja1g3153 597 PANTHER PMT16, PUTATIVE-RELATED 12 596 - -
Lja1g3153 597 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 114 318 IPR029063 -
Lja1g3153 597 PANTHER SAM-DEPENDENT METHYLTRANSFERASE 12 596 IPR004159 GO:0008168
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g3153 Lja-Chr1 38544414 38551346 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g3153 K23872 - gmx:100788069 1018.07
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g3153 1 38544414 38551346 Lja1g3153 1 38544414 38551346 ECH
Lja1g3153 1 38544414 38551346 Lja3g1952 3 22445283 22450592 PCT