Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g1894 ATGGACAAAGAGGAAGTGTGTGAGTTTCTCCGATGCGTTCCTCTTCTGCAGAGGCTTCCTACCTCGTCGATAAGGGAGATTTCGCAGCTTGTAATTGCCAAACACTATGAGGCAGGAGACTATGTTGCCCGTGAGGGTGAACCGGGGGATGCTGTTTTCTTCATATGGGATGGAGAGGCTGAGGTTGTTGGAGCTGTTAGTGCAAATGATGAAGATCATACTGAGTTCCGGTTGAAAAGATATGACTACTTTGGTTATGTTGCAGGTTTGTCAAATACAGTTCACCAAGCAGATGTTGTTGCTTTGTCTAAGTTGACATGCATAGTGCTACCCCATGAGCACTCAGCACTGCTACATCCAAAGTCTACAGAAAATGGTCTTGAGAGATGCCCACCTGTGGAGAGTATATTGCATCTGGAACCCTTTGAGGTAGATGTCTTCCGAGGAATCACACTTCCAAATACTCCAAGATTTGGAAAGGTGTTTGGGGGACAGATGATTGGACAGGCATTGGTTGCAGCATCAAAATCTGTTGACTGCCTTCGGTTTGTTCATAGTTTGCATGCCTATTTTCTTCTTGCGGGGGATTTATATATGCCTATTATGTATCAAGTTCACCGTCTCCGTGATGGAAAAAATTTTGCTGCAAGGAAAGTGGATGCAATTCAAAAGGGAAAAGTCATATTTACTTTGCTCGCTTCATTTCATAAAGAAGAATCAGGGCTTGACCACCAGGAAGTAGATATGCCATCTGTTCCTGCTCCAGACATGCTTCTACCAATGGAAGATCTACGGGAGAGACGTCTTCTTGACCCTCGCTTTCCGATATTCGAACCTGGGACCTCTGAGTTGAAATGCGTAGTATTTAATTTTGTGGTATCTCCCTTGGGACAAAACCAAAATAAAAAAGAGGTAACCTATGAAAAGTTAATTTTCTAA 939 0.4334 MDKEEVCEFLRCVPLLQRLPTSSIREISQLVIAKHYEAGDYVAREGEPGDAVFFIWDGEAEVVGAVSANDEDHTEFRLKRYDYFGYVAGLSNTVHQADVVALSKLTCIVLPHEHSALLHPKSTENGLERCPPVESILHLEPFEVDVFRGITLPNTPRFGKVFGGQMIGQALVAASKSVDCLRFVHSLHAYFLLAGDLYMPIMYQVHRLRDGKNFAARKVDAIQKGKVIFTLLASFHKEESGLDHQEVDMPSVPAPDMLLPMEDLRERRLLDPRFPIFEPGTSELKCVVFNFVVSPLGQNQNKKEVTYEKLIF* 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g1894 312 Pfam Cyclic nucleotide-binding domain 34 113 IPR000595 -
Lja3g1894 312 CDD CAP_ED 15 114 IPR000595 -
Lja3g1894 312 ProSiteProfiles cAMP/cGMP binding motif profile. 15 110 IPR000595 -
Lja3g1894 312 Gene3D Jelly Rolls 1 122 IPR014710 -
Lja3g1894 312 Gene3D - 128 306 IPR042171 -
Lja3g1894 312 CDD Thioesterase_II_repeat2 145 237 - -
Lja3g1894 312 Pfam Thioesterase-like superfamily 160 278 - -
Lja3g1894 312 SUPERFAMILY Thioesterase/thiol ester dehydrase-isomerase 132 241 IPR029069 -
Lja3g1894 312 SUPERFAMILY cAMP-binding domain-like 4 114 IPR018490 -
Lja3g1894 312 PANTHER ACYL-COA THIOESTERASE 50 275 - -
Lja3g1894 312 SMART cnmp_10 15 134 IPR000595 -
Lja3g1894 312 PANTHER ACYL-COA THIOESTERASE 50 275 IPR003703 GO:0006637|GO:0047617
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g1894 Lja-Chr3 21712400 21717835 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g1894 1 296 Acyl Lipid Metabolism Gene Families AT1G01710 55.184 3.77e-113 332
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g1894 K01068 - gmx:100803260 408.683
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g1894 3 21712400 21717835 Lja3g1894 3 21712400 21717835 ECH
Lja1g3096 1 37754532 37761610 Lja3g1894 3 21712400 21717835 PCT