Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g1881 ATGGCTTCACTGGGAGCCATATACACTGTAGTACTCTATGTGTTCCTTCTTGCTGCCACTTTGGTTTCTGCTGGGGATATAGTTCATCATGATGATGTTGCTCCTACAAGGCCTGGTTGTGAGAATAACTTTGTTCTGGTCAAAGTCCCCACTTGGATTGATGGTGTGGAAAGCCGTGAGTATGTTGGAGTTGGTGCAAGATTTGGCCCTACATTGGAATCAAAAGAAAAACATGCCAATCACACTAGAGTTGTCATGGCTGATCCTCCTGATTGTTGTAGCAAGCCTAAGAATAAGCTCACTAGCGAGATCATTTTGGTACACCGAGGAAAATGTAGTTTCACAACCAAGGCAAATATAGCTGATGAAGCTGGTGCTTCAGCCATCCTCATTATTAACTACCGTACAGAACTTTTCAAGATGGTTTGTGAAGAAAATGAAACTGATGTCGATATTGGAATACCTGCTGTCATGCTTCCACAAGAGGCTGGCTTAACATTGGAAAGACATATTAAAAACAACTCCATAGTGTCCATACAGTTATACTCTCCACTGCGTCCATTGGTTGATGTCGCGGAAGTATTTTTGTGGCTCATGGCTGTTGGTACCATTTTATGTGCTTCTTATTGGTCTGCCTGGACTGCCAGAGAAGCAGCTATTGAGCAAGAGAAGCTTTTAAAGGATGCTTCAGATGAATATGTTAATGCAGAAAAAGAAAATGTTGGTTCCAAGGGTTACGTGGAAATCAGTACGGGAGCAGCAATTTTATTCGTTGTGCTTGCTTCTTGTTTCTTGGTTATGCTGTACAAATTAATGTCACACCGGTTTGTTGAAGTTCTGGTGGTTCTATTTTGTATTGGTGGGGTAGAGGGACTGCAAACTTGTTTAGTAGCTCTGTTATCTTGTTTCAGATGGTTTCAACATCCTGCACAAACATTTGTGAAGATACCCTTCTTTGGAGCTGTCTCATATCTGACACTTGCCATTACTCCCTTCTGCATTGTGTTCGCTGTTGTTTGGGCAGTATATCGTCATGCATCAGTTGCTTGGATTGGTCAAGATATTCTTGGCATCGCGCTGATAATTACAGTTCTTCAGATTGTTCGCATACCAAATCTCAAGGTTGGGACTGTTCTTCTCAGTTGTGCCTTTCTGTATGACATCATATGGGTGTTTCTCTCTAAACGGTGGTTCCATGAGAGTGTGATGATAGTGGTAGCTCGAGGAGGTAAGAGTGGAGAAGACGGTATCCCCATGCTTCTCAAGATACCACGTTTGTTTGATCCTTGGGGTGGTTACAGCATCATTGGTTTTGGGGACATAATCTTACCAGGACTTCTGGTAGCATTTTCACTAAGGTATGATTGGTTAGCAAAGAAGAAGCTTCGTGCTGGATACTTCTTGTGGGCAATGACTGCTTATGGTTTAGGTCTCCTCATCACATATGTGGCTTTGAACTTGATGGATGGGCATGGCCAGCCGGCTTTGCTTTATATAGTCCCATTTACACTTGGCACCTTTTTGTCATTGGGAAAGAAGAGAGGTGAGTTAAAGATTTTATGGGCAAAAGGAGAACCAAAAAGGTCTTGCCCGCATATCCAAGAGGATAACCAATCATTTAACCACCATTGA 1632 0.4252 MASLGAIYTVVLYVFLLAATLVSAGDIVHHDDVAPTRPGCENNFVLVKVPTWIDGVESREYVGVGARFGPTLESKEKHANHTRVVMADPPDCCSKPKNKLTSEIILVHRGKCSFTTKANIADEAGASAILIINYRTELFKMVCEENETDVDIGIPAVMLPQEAGLTLERHIKNNSIVSIQLYSPLRPLVDVAEVFLWLMAVGTILCASYWSAWTAREAAIEQEKLLKDASDEYVNAEKENVGSKGYVEISTGAAILFVVLASCFLVMLYKLMSHRFVEVLVVLFCIGGVEGLQTCLVALLSCFRWFQHPAQTFVKIPFFGAVSYLTLAITPFCIVFAVVWAVYRHASVAWIGQDILGIALIITVLQIVRIPNLKVGTVLLSCAFLYDIIWVFLSKRWFHESVMIVVARGGKSGEDGIPMLLKIPRLFDPWGGYSIIGFGDIILPGLLVAFSLRYDWLAKKKLRAGYFLWAMTAYGLGLLITYVALNLMDGHGQPALLYIVPFTLGTFLSLGKKRGELKILWAKGEPKRSCPHIQEDNQSFNHH* 544
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g1881 543 Pfam Signal peptide peptidase 246 525 IPR007369 GO:0004190|GO:0016021
Lja3g1881 543 PANTHER PA DOMAIN, PRESENILIN/SIGNAL PEPTIDE PEPTIDASE-RELATED 8 543 - -
Lja3g1881 543 Pfam PA domain 90 167 IPR003137 -
Lja3g1881 543 Gene3D - 40 184 - -
Lja3g1881 543 Coils Coil 219 239 - -
Lja3g1881 543 PANTHER SIGNAL PEPTIDE PEPTIDASE 8 543 IPR007369 GO:0004190|GO:0016021
Lja3g1881 543 SMART psh_8 245 514 IPR006639 GO:0004190|GO:0016021
Lja3g1881 543 SUPERFAMILY PA domain 98 177 IPR046450 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g1881 Lja-Chr3 21553178 21563187 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g1881 K09597 - gmx:100795197 991.875
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g1881 3 21553178 21563187 Lja3g1881 3 21553178 21563187 ECH
Lja1g3085 1 37452946 37462416 Lja3g1881 3 21553178 21563187 PCT