Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g3085 ATGGTTCCACTTGGTGCTGTTTTTGCTGTTGTGTGTTCTGTGTTCATGGTTCTTGTCACTTTGAGTTTGGCTGGAGATATAGTACACCCTGATAACGTTGCTCCCAAGAGGCCTGGCTGTGACAACAACTTCGTTCTGGTTAAAGTCCCTACTTGGATTGATGGGGTCGTAAGTTGTGAGTATGTTGGTGTTGGTGCAAGATTTGGCCCGACCTTGGAATCAAAAGAAAAACGTGCTAACCATACTAGAGTTGCCATTGCAGACCCTCCTGATTGTTGTAGCAAGCCTAAGAATAAGCTCACTGGGGAGATTATTTTGGTGTACCGAGGACAGTGTAGTTTCACAACCAAGGCAAATATAGCGGAAGAAGCTGGGGCTTCAGCCATCCTCATTATAAATAACCGTGCAGAACTTTTCAAGATGGTTTGTGAAGAGAATGAAACTGATATTGATATTGGAATACCTGCTGTCATGCTTCCACAATATGCTGGCGAGAACTTGGAAAATCATATACTAAACAAGTCCACAGTGTCTGTGCAGTTATACTCTCCACGGCGCCCAATGGTTGATGTTGCTGAAGTCTTTTTATGGCTTATGGCGGTTGGTTCTATTCTCTGTGCTTCTTATTGGTCTGCCTGGACTGCCCGAGAGGCTGCTACAGAGCAAGAGAAGCTATTAAAGGATGCTTCAGCTGAGTATCTAAATATAGGAGATACTGGTTCAAGTGCTTTTGTGGAAATCAGTACTACAGCAGCGATCGCATTTGTTGTTATTGCTTCATGTTTCTTGGTTATGCTTTACAAATTAATGTCAGCCTGGTTTATTGACGTTCTGGTGGTTCTATTTTGCATTGGTGGGGTTGAGGGACTGCAAACTTGCTTGGTGGGTCTGTTATCTTGTTTCAGATGGTTCCAACATGCTGGACAAACATTTGTGAAAGCACCTTTCTTTGGAGCTGTATCATATCTGACACTTGCTGTTACTCCCTTCTGCATAGTGTTTTCTGTCCTTTGGGGAGTTTTTCACCATGAATCGTTTGCTTGGATTGGTCAAGATATTCTCGGTATTGCATTGATAATTACAGTTCTTCAGATTGTCCACATACCAAATCTCAAGGTTGGAACTGTTCTTCTCAGTTGTGCCTTCCTATACGACATCTTCTGGGTGTTTGTCTCTAAATGGTGGTTCCACGAGAGTGTGATGATAGTGGTAGCTCGAGGTGATAAAAGCAGAGAAGACGGTATCCCCATGCTACTCAAGATACCACGTTTGTTTGATCCTTGGGGTGGTTACAGCGTGATTGGTTTTGGGGACATAATCTTACCAGGGCTTCTAGTAGCATTTTCACTGAGGTATGATTGGTTGGCAAAGAAGAACCTCCGAGCTGGATACTTCTTGTATGCAATGACTGCTTATGGTTTAGGTCTCCTTGTGACATACTTAGCTTTGAACTTGATGGATGGGCATGGTCAACCAGCTTTGCTTTATATTGTCCCATTTACACTTGGAACCTTTTTGTCATTGGGAAAGAAGAGAGGTGAACTCGAGATTTTATGGACAAGAGGGAAGCCAAGAGTGCCTTGCCCTCACATCCAAGAGGATCATCATCAATCAATGGACCAGAAATCCTTAGCAGAATAG 1641 0.4327 MVPLGAVFAVVCSVFMVLVTLSLAGDIVHPDNVAPKRPGCDNNFVLVKVPTWIDGVVSCEYVGVGARFGPTLESKEKRANHTRVAIADPPDCCSKPKNKLTGEIILVYRGQCSFTTKANIAEEAGASAILIINNRAELFKMVCEENETDIDIGIPAVMLPQYAGENLENHILNKSTVSVQLYSPRRPMVDVAEVFLWLMAVGSILCASYWSAWTAREAATEQEKLLKDASAEYLNIGDTGSSAFVEISTTAAIAFVVIASCFLVMLYKLMSAWFIDVLVVLFCIGGVEGLQTCLVGLLSCFRWFQHAGQTFVKAPFFGAVSYLTLAVTPFCIVFSVLWGVFHHESFAWIGQDILGIALIITVLQIVHIPNLKVGTVLLSCAFLYDIFWVFVSKWWFHESVMIVVARGDKSREDGIPMLLKIPRLFDPWGGYSVIGFGDIILPGLLVAFSLRYDWLAKKNLRAGYFLYAMTAYGLGLLVTYLALNLMDGHGQPALLYIVPFTLGTFLSLGKKRGELEILWTRGKPRVPCPHIQEDHHQSMDQKSLAE* 547
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g3085 546 Pfam Signal peptide peptidase 243 522 IPR007369 GO:0004190|GO:0016021
Lja1g3085 546 Gene3D - 40 184 - -
Lja1g3085 546 SUPERFAMILY PA domain 99 144 IPR046450 -
Lja1g3085 546 Pfam PA domain 90 167 IPR003137 -
Lja1g3085 546 SMART psh_8 243 512 IPR006639 GO:0004190|GO:0016021
Lja1g3085 546 PANTHER PA DOMAIN, PRESENILIN/SIGNAL PEPTIDE PEPTIDASE-RELATED 8 541 - -
Lja1g3085 546 PANTHER SIGNAL PEPTIDE PEPTIDASE 8 541 IPR007369 GO:0004190|GO:0016021
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g3085 Lja-Chr1 37452946 37462416 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g3085 K09597 - gmx:100808921 973.385
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g3085 1 37452946 37462416 Lja1g3085 1 37452946 37462416 ECH
Lja1g3085 1 37452946 37462416 Lja3g1881 3 21553178 21563187 PCT