Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g1880 ATGTCAGAAATTGATATGCCTGTTATTAAACCTGAGATGATGAAGCCTTATGTATGGCTTCAAACGTCCGATGATTCAATCCAACAAGTGGAACAAGAAATTGCAATGTTTTGCCCACTGATATGCCAAGAAATTATACAAAAAGGCACCGGATCTTCCAAGAACTGTGCAATATGTCTTCCTCAACAAGTCAGTCCTGCTATGTTGAGCTTAATTCTTGATTATTGTCGATTCCATCAAGTACCAGGCCGCTCAAACAAGGAACGAAAGTCTTATGATGAGAAATTCGTTAGGATAGACACAGAAAGGCTCTGTGAGTTAACGTCTGCTGCAGACAGCCTTCAGTTAAAGCCACTGGTTGATCTTACCAGTCGTGCACTTGCTCGAATAATTGAAGGGAAAACGCCGGAGGAGATACGTGAGATATTTCATTTGCCTGATGACCTTACAGAGGAAGAGAAGTTGGAGCCCTTGAGGAACATAACGGATGATCCAAGGATCAGGCTTTTAAACCGTTTGTATGCCAAAAAACGGAAAGAACTAAAGGAGCGTGGAAGGTTAAAGAATGCTGAAGCTGAAGAAGAGCATGTAGATGAACGATCAGTTGACGACCTTTTGTCTTTTATTAATGGAAACGATGGAGATTCAAAGGAAATTAAGACTTCCAAGAACAAAAAGAAGAACCGCAGGAAAAAGGAGCAACAGAAGAACTCTTTAAAAGAAGTGTCTGAGCTGAATAAGAAGGCGGTAAACGGTCATAACATCAGACCCGAAAGTTCTGAAGTTGATATATGTGAGACCTCAAATTCGCAATATAGAGAAGATGACACTTTTCCTTCGAAGCTTGAGTTTGATGATGGTGATATAGATGATGAGATTGATCCTGCATTGAAGGAAAAAATCGACAGGGAAGTGGAAGATTTTGCCCGCAGATTAAATTCTGACTGGCCAGAGAGAATGCAAGAATTCTTAACGTCAGGGCAAGAAAGGAATACAATGCTTTTCAGTACTCATGGGACTGGTTTTCTAAGACGACATGCTTGA 1044 0.4071 MSEIDMPVIKPEMMKPYVWLQTSDDSIQQVEQEIAMFCPLICQEIIQKGTGSSKNCAICLPQQVSPAMLSLILDYCRFHQVPGRSNKERKSYDEKFVRIDTERLCELTSAADSLQLKPLVDLTSRALARIIEGKTPEEIREIFHLPDDLTEEEKLEPLRNITDDPRIRLLNRLYAKKRKELKERGRLKNAEAEEEHVDERSVDDLLSFINGNDGDSKEIKTSKNKKKNRRKKEQQKNSLKEVSELNKKAVNGHNIRPESSEVDICETSNSQYREDDTFPSKLEFDDGDIDDEIDPALKEKIDREVEDFARRLNSDWPERMQEFLTSGQERNTMLFSTHGTGFLRRHA* 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g1880 347 MobiDBLite consensus disorder prediction 270 290 - -
Lja3g1880 347 Pfam Skp1 family, tetramerisation domain 18 80 IPR016073 GO:0006511
Lja3g1880 347 PANTHER SKP1 1 264 IPR016897 GO:0006511
Lja3g1880 347 MobiDBLite consensus disorder prediction 207 246 - -
Lja3g1880 347 SMART skp1_3 15 116 IPR001232 GO:0006511
Lja3g1880 347 SUPERFAMILY POZ domain 16 80 IPR011333 -
Lja3g1880 347 Coils Coil 222 248 - -
Lja3g1880 347 Pfam Skp1 family, dimerisation domain 117 154 IPR016072 GO:0006511
Lja3g1880 347 Gene3D Potassium Channel Kv1.1; Chain A 12 161 IPR011333 -
Lja3g1880 347 PANTHER SKP1-LIKE PROTEIN 20 1 264 - -
Lja3g1880 347 SUPERFAMILY Skp1 dimerisation domain-like 90 159 IPR036296 GO:0006511
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g1880 Lja-Chr3 21544061 21551696 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g1880 - - gmx:100794666 573.933
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g1880 3 21544061 21551696 Lja3g1880 3 21544061 21551696 ECH
Lja3g1880 3 21544061 21551696 Lja1g3084 1 37439021 37448225 ECH
Lja1g3084 1 37439021 37448225 Lja3g1880 3 21544061 21551696 PCT