Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g3084 ATGGCAGAAATCGACAAGGGGGTAATTAAACCCGAGATGTTGAAGCCCTATGTTTGGCTTCAGACTTCAGATGGTTCAATCCAACAAGTGGAACATGAAGTTGCAACAGTTTGCCCTCTGATTTGTCAAGAAATAATACACAAAGGCACTGGATCTTCCAAGAATTGTGCAATATCTCTTCCTCAAGAAGTCAGTCCTGCGATGCTGAGCTTAATTCTTGATTATTGCCGTTTTCATCAACGACAGGGTCGCTCAAACAAGGAAAAGAAGTCCTATGATGAGAAATTCATTAAGAAAGACACAAACCAGCTCTTTGGGTTAGTTAAAGCTGCAGACAGCCTTCAGTTGAAGTCATTGGTTGATCTTACAAGTTGTGCAATTGCTCGAGTAATGGAAGGAAAATCTCCTGAGGTTATACGTGAAATGTTTCATTTGCCAGATGATCTTACCGAGGAAGAGAAGTTGGAGCCCTTTAAAAACATAACTGATGACCCAAGGATCAGGCTTTTGAACCGTTTGAATGCCAAAAAATTGAAAGAACTAAAAGAGCGTGAAAGCTTAAAGAATGTTGAAGTCAAAGATGAGCATGTAGATGATCGTACGGTTGAAGACCTTTTGTCTTTTATCAATGGAAATGATAGAGATCAAAAGGAGATTAAAACTTCTAAGAATAAAAAAAAGAACAGAAGGAAAAAAGGGCAACAGAAGTTCTCTTCTTTGAAGGAAGCTTCTGAACCAAATAAGAAGGAGGTTAATGGTCATGATATCGAATCCCAAAATGCTGAAGCTGATAGATTTGCCCGGAACTCGAATTCACATACCGAAGATGACGTTTCTGCTCATAAAGAGATTGATGATGACGATATAGATGATGAAATTGATCCTGCACTAAAGGAAAAAATTGACAGGGAGGTGGAAGATTTTGCCCGCCGATTGAATTCTGATTGGCCAGAGAGGATGCAAGAACTTTTATCATCAGGACAAGAAAGGAACACAATGTTTTTCGCTACCAACAGAACCAGTTTTCTAAGGAGAGCTACATGA 1044 0.3927 MAEIDKGVIKPEMLKPYVWLQTSDGSIQQVEHEVATVCPLICQEIIHKGTGSSKNCAISLPQEVSPAMLSLILDYCRFHQRQGRSNKEKKSYDEKFIKKDTNQLFGLVKAADSLQLKSLVDLTSCAIARVMEGKSPEVIREMFHLPDDLTEEEKLEPFKNITDDPRIRLLNRLNAKKLKELKERESLKNVEVKDEHVDDRTVEDLLSFINGNDRDQKEIKTSKNKKKNRRKKGQQKFSSLKEASEPNKKEVNGHDIESQNAEADRFARNSNSHTEDDVSAHKEIDDDDIDDEIDPALKEKIDREVEDFARRLNSDWPERMQELLSSGQERNTMFFATNRTSFLRRAT* 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g3084 347 SUPERFAMILY POZ domain 16 81 IPR011333 -
Lja1g3084 347 MobiDBLite consensus disorder prediction 214 292 - -
Lja1g3084 347 Gene3D Potassium Channel Kv1.1; Chain A 12 161 IPR011333 -
Lja1g3084 347 Coils Coil 170 195 - -
Lja1g3084 347 MobiDBLite consensus disorder prediction 235 280 - -
Lja1g3084 347 PANTHER SKP1 1 279 IPR016897 GO:0006511
Lja1g3084 347 PANTHER SKP1-LIKE PROTEIN 20 1 279 - -
Lja1g3084 347 Pfam Skp1 family, dimerisation domain 117 154 IPR016072 GO:0006511
Lja1g3084 347 SUPERFAMILY Skp1 dimerisation domain-like 90 160 IPR036296 GO:0006511
Lja1g3084 347 SMART skp1_3 15 116 IPR001232 GO:0006511
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g3084 Lja-Chr1 37439021 37448225 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g3084 - - gmx:100809439 479.944
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g3084 1 37439021 37448225 Lja1g3084 1 37439021 37448225 ECH
Lja3g1880 3 21544061 21551696 Lja1g3084 1 37439021 37448225 ECH
Lja1g3084 1 37439021 37448225 Lja3g1880 3 21544061 21551696 PCT