Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g1860 ATGAACAACAATCCCAAAGACCCAGATCAATTTTACTCTTCACGAAGCTTCTCAAAGCTAATGGTGTTCCTCCTCCTCTTAATCTCCATCCCCTACCTCTTCTACTCCCTGCGATTCATCACCCATTCCAATCACTGTGATCAAAACCCCAACATTCCCACCATCCACACCACTTCACTCTCTGAAAAACAACCCCAAATCCCAACCCCAAAACCGTTTGAACAAACCAACATTTCTCACATAGTCTTCGGAATCGGAGCCTCATCAAATCTATGGAAGCAGAGGAAAGAGTACGTCAAGCTCTGGTGGAAACCCAATCAAATGCGCGGCGTCGTGTGGCTGGAGCAGAACGTAACAAAACCCGATCCCGGCGACGAGAATCTCTTGCCGGAGCTGAGAATCTCCGGCAACACAACGAATTTCAAATACTCCTACCCGAAGGGTAGCAGGTCCGCAATCAGAATCTCGCGGATCGTTTCGGAAACAGTGAGACTTCGATTGAAAGATGTGAGGTGGTTTGTGATGGGGGACGATGACACGTTCTTCGTGACGGAGAATTTGGTTAGGGTTTTGCAGAAGTATGATCACAATCAATTCTATTACATTGGGAGTTCTTCAGAGACGCATTTGCAGAACATTTATCATTCTTACAATATGGCTTATGGCGGTGGTGGATTTGCGATTAGCTATGGTTTGGCGGTGGCGTTGGAGAAGATGCAGGATCGGTGTATTCAGAGGTATGCTGGATTGTATGGCTCTGATGATCGGATTCATGCTTGCATGGCGGAGCTTGGGGTTCCACTCACCGTCGAGAAAGGGTTTCATCAGTGTGATGTGTACGGCAATCTCTTTGGGCTTTTAACAGCCCATCCCGTCACACCATTAATATCCCTCCATCACCTTGACGTAGTAGAGCCCATATTCCCAAACGTGACCCAGGCCCAAGCCCTAAAGCGGCTCACGCAGCCCATGGATCTCGACTCCGCCGGGCTCATGCAGCAATCCATATGCTACGACGAGGCCCGCAAATGGACGGTGTCGGTGTCGTGGGGCTACGCCGTTCAAATCTTCCGCGGCATCTTCTCCGCTCGGGAAATGGAGATGCCGGCGAGGACCTTCCAGAACTGGTACCGGCGCGCCGATAGCACCTCCTTCACCTTCAACACGCGCCCTATCACCAGAAACAGTTGTCAGATACCGTTTGTTTACTACTTCTCTTACGCGGTTTACAACGAGGACACTCACCAGACCGCAACTCGGTACGTTCGGGTTGAATCGAACCCGGAGTGCAAGTGGAGGATGGAGGATCCGACGCAGATTGAAGTGGTGGAGGTTTACAAGAAGCCAAACCCTAATTTGTGGGACAAGTCTCCGAGGAGAAATTGTTGCAGGGTGAAGCCGACGAAGAAGAAAGGAACTATGGTGATTGATGTGGGGGAATGCAGGGAAGGTGAAGTTGTTGAATTGTAG 1470 0.5007 MNNNPKDPDQFYSSRSFSKLMVFLLLLISIPYLFYSLRFITHSNHCDQNPNIPTIHTTSLSEKQPQIPTPKPFEQTNISHIVFGIGASSNLWKQRKEYVKLWWKPNQMRGVVWLEQNVTKPDPGDENLLPELRISGNTTNFKYSYPKGSRSAIRISRIVSETVRLRLKDVRWFVMGDDDTFFVTENLVRVLQKYDHNQFYYIGSSSETHLQNIYHSYNMAYGGGGFAISYGLAVALEKMQDRCIQRYAGLYGSDDRIHACMAELGVPLTVEKGFHQCDVYGNLFGLLTAHPVTPLISLHHLDVVEPIFPNVTQAQALKRLTQPMDLDSAGLMQQSICYDEARKWTVSVSWGYAVQIFRGIFSAREMEMPARTFQNWYRRADSTSFTFNTRPITRNSCQIPFVYYFSYAVYNEDTHQTATRYVRVESNPECKWRMEDPTQIEVVEVYKKPNPNLWDKSPRRNCCRVKPTKKKGTMVIDVGECREGEVVEL* 490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g1860 489 Gene3D - 68 328 - -
Lja3g1860 489 PANTHER FRINGE-RELATED 1 488 - -
Lja3g1860 489 Pfam Protein of unknown function, DUF604 211 463 IPR006740 -
Lja3g1860 489 PANTHER TRANSFERRING GLYCOSYL GROUP TRANSFERASE 1 488 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g1860 Lja-Chr3 21206461 21211217 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g1860 3 484 Glycosyltransferase AT5G41460 60.465 0.0 634
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g1860 - - gmx:100789583 771.155
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g3065 1 37183614 37188955 Lja3g1860 3 21206461 21211217 PCT