Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g1848 ATGGGTTTGGGAAGTGATCAGAATCATCAACTTTTGTCCAAGATTGCAACCAATGACAAACATGGAGAGAATTCTCCATACTTTGATGGGTTGATGGCTTATGAAAGAGACCAATTTCACCCTACAAAAAATCCTAATGGTGTTATCCAGCTTGGTCTAGCAGAAAATCAGCTCTGCTTTGATCTGATTGAAGAGTGGATAAGAAATAACCCCAAGGCATCAATTTGCACTCCTGAAGGAGTGCATAAGTTCAGAGAGATTGCAAACTTTCAGGACTATCATGGATTGCCAGAGTTCACAAGAGCTATGGCAAATTTTATGTCAAAAGTGAGAGGTGGGAGGGTGAAATTTGATCCTGAGCGTATACTGATGAGTGGAGGGGCGACAGGGGCAAACGAGTTGATCATGTTCTGCTTGGCTGATCCTGGGGATGCTTTTCTTGTTCCCACACCTTATTATCCTGCATTCTTGCGTGATTTATGTTGGCGAACTAAGGCGCAATTAATCCCTGTTCTCTGTGATAGCTCCAACAACTTCAAGATAACAAGAGAAGCTCTTGAAGCAGCTTACAACAAAGCCCAAGAGGACAACATCAATGTGAAAGGAGTGATTATAACCAACCCCTCCAACCCTTTGGGAACCATCCTAGACAGAGACACAATGAAGAGCATCGTGAGCTTCATCAATGAGAACAACATCCATTTAATTTCTGAAGAAGTGTATGCAGCCACGGTTTTCAGATCCCCAAGCTCTTATGTGAGCGTTGCTGAAGTCATCCAAGACATGGAAGAGTGCAACAATAATATTAATCTTGATCTCATTCACATCACTTACAGTTTGTCTAAGGACATGGGGTTCCCTGGTTTTAGAGTTGGGATAGTTTATTCATTCAATGATGGAGTTGTGAGTTGTGGAAGGAAAATGTCAAGCTTTGGGTTAGTCTCCTCTCAGACTCAACACATGCTGGCTTCAATGCTTTCAAATGACAAATTTGTGGACAATTTTCTCAAGGAGAATTCAAGGAGGTTGGCTAAAAGGTATGACTACTTCACAAAGGGGCTTGAAGAGGTTAACATAACTCGCTTTCCAAGCGACGCAGGACTCTTTTGTTGGATGAACTTGAAAAGCTTGCTTAAGGATCAAACATTTGAAGCTGAGCTGAAGTTGTGGCGTGTGATCATGAATGAGGTGAAGCTCAACGTATCGCCAGGCTCATCTTTTTGTTGCTTCGAGCCTGGTTGGTTTAGGGTTTGCTTTGCTAACATGGATAATGAAACTGTGGAAGTCGCTCTCAACAGGATCCGGACATTCATAGGCAAGGAAACAAAGAACCAAGTGAAGATCAAACGTTGGCAACCGAATCTCAAACTCAGTTTCTCCTCGAGAAAGTTTGAAGAGAGTACTGTTTTATCACCTCACATGATGTCTCCTCATTCACCAATTTCCCACTCACCCCTTGTGATTCCAGCCACTTAA 1476 0.4255 MGLGSDQNHQLLSKIATNDKHGENSPYFDGLMAYERDQFHPTKNPNGVIQLGLAENQLCFDLIEEWIRNNPKASICTPEGVHKFREIANFQDYHGLPEFTRAMANFMSKVRGGRVKFDPERILMSGGATGANELIMFCLADPGDAFLVPTPYYPAFLRDLCWRTKAQLIPVLCDSSNNFKITREALEAAYNKAQEDNINVKGVIITNPSNPLGTILDRDTMKSIVSFINENNIHLISEEVYAATVFRSPSSYVSVAEVIQDMEECNNNINLDLIHITYSLSKDMGFPGFRVGIVYSFNDGVVSCGRKMSSFGLVSSQTQHMLASMLSNDKFVDNFLKENSRRLAKRYDYFTKGLEEVNITRFPSDAGLFCWMNLKSLLKDQTFEAELKLWRVIMNEVKLNVSPGSSFCCFEPGWFRVCFANMDNETVEVALNRIRTFIGKETKNQVKIKRWQPNLKLSFSSRKFEESTVLSPHMMSPHSPISHSPLVIPAT* 492
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g1848 491 ProSitePatterns Aminotransferases class-I pyridoxal-phosphate attachment site. 279 292 IPR004838 GO:0003824|GO:0009058|GO:0030170
Lja3g1848 491 PANTHER BIFUNCTIONAL ASPARTATE AMINOTRANSFERASE AND GLUTAMATE/ASPARTATE-PREPHENATE AMINOTRANSFERASE-RELATED 7 455 - -
Lja3g1848 491 Coils Coil 176 196 - -
Lja3g1848 491 Gene3D - 71 328 IPR015421 GO:0003824
Lja3g1848 491 Pfam Aminotransferase class I and II 49 434 IPR004839 GO:0009058|GO:0030170
Lja3g1848 491 MobiDBLite consensus disorder prediction 472 491 - -
Lja3g1848 491 CDD AAT_like 89 435 - -
Lja3g1848 491 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 273 297 - -
Lja3g1848 491 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 121 141 - -
Lja3g1848 491 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 84 100 - -
Lja3g1848 491 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 143 164 - -
Lja3g1848 491 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 197 221 - -
Lja3g1848 491 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 305 328 - -
Lja3g1848 491 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 51 77 - -
Lja3g1848 491 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 233 256 - -
Lja3g1848 491 PANTHER 1-AMINOCYCLOPROPANE-1-CARBOXYLATE SYNTHASE 7 455 - -
Lja3g1848 491 SUPERFAMILY PLP-dependent transferases 17 439 IPR015424 -
Lja3g1848 491 Gene3D Aspartate Aminotransferase, domain 1 37 433 IPR015422 GO:0003824
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g1848 Lja-Chr3 20969945 20973508 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g1848 K20772 - gmx:100817401 783.097
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g1848 3 20969945 20973508 Lja3g1848 3 20969945 20973508 ECH
Lja1g3054 1 36963097 36966995 Lja3g1848 3 20969945 20973508 PCT