Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g3054 ATGGCTTTGGGGAACATTAAGAGTACTCACCAGCTTCTCTCCAAGATTGCAACCAACGACAAGCATGGAGAGAATTCTCCTTACTTTGATGGGTGGAAGGCTTATGAAACAAACCCATTTCACCCCACAAAAAATCCTCAGGGTGTTATCCAGATGGGTCTTGCTGAAAATCAGCTCTCCTTTGATCTGATTGAAGAGTGGATCAGGAACAATCCCAAGGCCTCCATTTGCACTCCTGAAGGAGTAGATAATTTCAGGCACATTGCAAACTTTCAGGACTATCATGGGCTGCCAGAGTTCAGAAATGCAGTGGCAAAATTCATGTCAAAAGTGAGAGGAGGTAGGGTGAGATTTGATCCTGACCGTATACTGATGAGTGGAGGAGCCACAGGGGCAAATGAGTTAATCATGTTCTGTTTGGCTGATCCAGGAGATGCTTTTCTAGTTCCCTGCCCTTATTATCCAGCATTCGTGCGTGACTTGTGCTGGAGAACCGGAGTGCAACTAATTCCTGTCCAATGTGACAGCTCCAACAACTTCATGATAACAAGAGAAGCTCTTGAAGCAGCATATAACAAAGCAAAAGCCCACAACATCAATGTGAAGGGTTTGCTCATCACAAACCCTTCAAATCCTCTTGGAACCACGGTGGACCGCGAAACACTGAAGAGCATCGTGCGCTTCATCAATGAAAAGAACATCCATTTTGTATGCGATGAAATCTACGCGGCCACAGTTTTCAACACTCCAACCTTTGTGAGTGTCGCCGAAGTAATCCAAGAAATCGAGCATTGCAAACGCAATCTCATTCACATTATCTATAGTTTATCCAAAGACATGGGGCTTCCAGGTTTTAGAGTTGGATTGGTTTATTCATACAATGATGAAGTAGTGAACTGTGGAAGAAAAATGTCTAGCTTTGGATTAGTGTCATCACAGACACAACATTTTTTGGCTGCGATGCTTGCAGATGAGGAGTTTGTGGAAAGGTTTCTTAAAGAAAGCGCGAAGAGGCTGAGGCTGAGGCATGAGTACTTCACGAAAGGGCTTGAGAAGGTGAACATTACTTGCTTGCCAAGCAACGCGGGGCTTTTCTGCTGGATGAATCTGAGGGGTTTGCTGAAGAAACACACGTTTGAAGGCGAGATGGTGTTGTGGCGCATGATTGTGAATGAGGTGAAGCTCAATGTTTCACCGGGGTCGGCTTTTAACTGCTCTGAGCCTGGTTGGTTCAGGGTTTGCTTTGCGAACATGGATCATGAAACTGTGGAGGTTGCGCTCAAGAGGATAAGAGCGTTTGTCGGGAAAGAAATTGGGGTGGAACGCAAACGTTGGAAGAGCAACCTTAGGCTCAGTTTCTCAACAAGGAGATTTGATGAGACTGTTATCATGTCTCCTCACATGATGTCTCCTCATTCACCTCTTGTCAGAGCAACCACTTAA 1443 0.4518 MALGNIKSTHQLLSKIATNDKHGENSPYFDGWKAYETNPFHPTKNPQGVIQMGLAENQLSFDLIEEWIRNNPKASICTPEGVDNFRHIANFQDYHGLPEFRNAVAKFMSKVRGGRVRFDPDRILMSGGATGANELIMFCLADPGDAFLVPCPYYPAFVRDLCWRTGVQLIPVQCDSSNNFMITREALEAAYNKAKAHNINVKGLLITNPSNPLGTTVDRETLKSIVRFINEKNIHFVCDEIYAATVFNTPTFVSVAEVIQEIEHCKRNLIHIIYSLSKDMGLPGFRVGLVYSYNDEVVNCGRKMSSFGLVSSQTQHFLAAMLADEEFVERFLKESAKRLRLRHEYFTKGLEKVNITCLPSNAGLFCWMNLRGLLKKHTFEGEMVLWRMIVNEVKLNVSPGSAFNCSEPGWFRVCFANMDHETVEVALKRIRAFVGKEIGVERKRWKSNLRLSFSTRRFDETVIMSPHMMSPHSPLVRATT* 481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g3054 480 PANTHER BIFUNCTIONAL ASPARTATE AMINOTRANSFERASE AND GLUTAMATE/ASPARTATE-PREPHENATE AMINOTRANSFERASE-RELATED 9 451 - -
Lja1g3054 480 CDD AAT_like 90 432 - -
Lja1g3054 480 Pfam Aminotransferase class I and II 50 430 IPR004839 GO:0009058|GO:0030170
Lja1g3054 480 Gene3D Aspartate Aminotransferase, domain 1 38 429 IPR015422 GO:0003824
Lja1g3054 480 SUPERFAMILY PLP-dependent transferases 18 435 IPR015424 -
Lja1g3054 480 PANTHER 1-AMINOCYCLOPROPANE-1-CARBOXYLATE SYNTHASE 9 451 - -
Lja1g3054 480 ProSitePatterns Aminotransferases class-I pyridoxal-phosphate attachment site. 275 288 IPR004838 GO:0003824|GO:0009058|GO:0030170
Lja1g3054 480 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 122 142 - -
Lja1g3054 480 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 144 165 - -
Lja1g3054 480 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 234 257 - -
Lja1g3054 480 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 52 78 - -
Lja1g3054 480 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 85 101 - -
Lja1g3054 480 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 198 222 - -
Lja1g3054 480 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 269 293 - -
Lja1g3054 480 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 301 324 - -
Lja1g3054 480 Gene3D - 72 324 IPR015421 GO:0003824
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g3054 Lja-Chr1 36963097 36966995 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g3054 K20772 - gmx:100775969 834.328
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g3054 1 36963097 36966995 Lja1g3054 1 36963097 36966995 ECH
Lja1g3054 1 36963097 36966995 Lja3g1848 3 20969945 20973508 PCT