Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g0124 ATGGAAGGGGAAATATCATGGATAAGCCACTATGATAACAGACGAAGGGAGATTCGGGATTTTGTTTCACTTTCAGAACCTGGTGAGGAAGATGAAAAAGAAGGAACTATTGTTTCTGTGGATGAAGTTTTGCCTGGTGACTTGTTGGAACATATCCTAATGTATCTCCCCATTGCGAGCATTTTTAGAGCTTGTTGTGTGTGTAAAAGATGGCGTGAAATTGTTACTAAAGAGAGGTTTTTATCGAACCTTTCACATATTCTTCCGCAGAAACCTTGGTACTTTATGTTTACAAACTGTGATGAACCAATCGGTTATGCTTTTGATCCCTTCCTTCGCAAATGGTATGGCGTTGAACTTCCATGCATTGACACTTCTAATTGGTTTATTGCTTCATCCGGTGGCATGGTTTGCTTCATGGACTATGACATCAAGGATGAATTATACGTCTGCAACCCTATTACCAAAAGCTACAAGAAACTTGAGGACCATCCAGCTTTGAAATTTTCTGATTACAATGCATTAGCACTCTCAGTGAACAGGGAATCTCACAGTTACACCGTGGCAATTGTAAGATCTAAGCAAGTCCCAGAAACCTTTTTCGAGTGGGATATCTCAATTCATTTATACCATTCAGAAAAAGTAACTTGGGAGACACCTTTAACAGAGGTTTCGATGGGTTGGAGAGGTGGTAACGAGAGTGTGATATGTAATGGGGTGCTATACTTTTTAGCTTACTCAACTGGAGGCGGCCTGCTGGAAAATCGCCATGCCCTAGTTGCATATAATTTGTCCAACTGTTCTTCTCAAGATAGCTTAACAACGAGCTTTATTCCAGTACCTTGTTATCTAACATGTGCCCGTCTAATGAATTTGAAGGGGAAGCTTGTAATGGTGGGAGGAATCGGTAAATCAGCTCGACATGACATAATAAAAGGAGTTGGTATATGGGTTCTGAATGATAGGAAGTGGGAAGAGATTGGACGAATGCCGCTCAAATTCTTCCAAGGCTTTGGGGAGTTTGATGATGTTTTTGCTAGTAGTGGTGCAGATGATCTTATATTTATTCAAAGTTATGGAGCTCCCACTCTTCTCATATATGACATGAGCCATAACCAATGGAAATGGTCACCAAAGTGCCCTGTGACAAAAAGATTTTCCCTGCAGTTCTTTACTGGTTTTTGCTTTGAGCCTAGGCTTGAAATTGCTCCATAG 1215 0.4074 MEGEISWISHYDNRRREIRDFVSLSEPGEEDEKEGTIVSVDEVLPGDLLEHILMYLPIASIFRACCVCKRWREIVTKERFLSNLSHILPQKPWYFMFTNCDEPIGYAFDPFLRKWYGVELPCIDTSNWFIASSGGMVCFMDYDIKDELYVCNPITKSYKKLEDHPALKFSDYNALALSVNRESHSYTVAIVRSKQVPETFFEWDISIHLYHSEKVTWETPLTEVSMGWRGGNESVICNGVLYFLAYSTGGGLLENRHALVAYNLSNCSSQDSLTTSFIPVPCYLTCARLMNLKGKLVMVGGIGKSARHDIIKGVGIWVLNDRKWEEIGRMPLKFFQGFGEFDDVFASSGADDLIFIQSYGAPTLLIYDMSHNQWKWSPKCPVTKRFSLQFFTGFCFEPRLEIAP* 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g0124 404 Gene3D - 125 395 IPR015915 GO:0005515
Lja1g0124 404 ProSiteProfiles F-box domain profile. 44 84 IPR001810 GO:0005515
Lja1g0124 404 PANTHER OS02G0260200 PROTEIN 2 403 - -
Lja1g0124 404 Pfam F-box domain 44 80 IPR001810 GO:0005515
Lja1g0124 404 Gene3D - 29 80 - -
Lja1g0124 404 SUPERFAMILY F-box domain 42 124 IPR036047 GO:0005515
Lja1g0124 404 SMART fbox_2 44 84 IPR001810 GO:0005515
Lja1g0124 404 TIGRFAM F_box_assoc_1: F-box protein interaction domain 135 368 IPR017451 -
Lja1g0124 404 PANTHER F-BOX FAMILY PROTEIN 2 403 IPR045048 -
Lja1g0124 404 SUPERFAMILY Galactose oxidase, central domain 65 383 IPR011043 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g0124 Lja-Chr1 1050169 1052444 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g0124 - - gmx:100817678 640.188
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g0124 1 1050169 1052444 Lja1g0124 1 1050169 1052444 ECH
Lja1g0124 1 1050169 1052444 Lja3g1824 3 20652398 20655533 PCT