Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g1796 ATGGCTTCGGAGGATGTGAAGACCACCGGCGAATCCGCCGTAACGAAGATCGTCAGTTTGGCGGAGGAGGCAAAGCTCGCCAGAGAAGGCGTTGTTAAGGCTCCCAACTATGCCTTAGCTAGCATCTGCAAGTCCCTCGTTGCCGGTGGAGTCGCCGGAGGAGTATCACGTACGGCAGTTGCTCCGCTGGAGCGGTTGAAAATTTTGCTGCAGGTCCAGAATCCTCATAATATAAAATACAATGGAACAATACAAGGCCTAAAATATATATGGAGAACTGAAGGTTTCCGTGGACTGTTCAAAGGGAACGGAACTAATTGTGCTCGAATTGTCCCTAATTCTGCTGTGAAGTTCTTCAGTTATGAGCAAGCTTCCAAAGGTATACTGTATATGTATCAGCAGCAAACTGGAAATGAGGATGCTCAGCTGACTCCTGTTTTACGTCTTGGAGCTGGAGCATGTGCTGGAATAATTGCTATGTCTGCAACCTACCCAATGGATATGGTTCGAGGCAGGATCACTGTGCAGACTGAGAAATCCCCTTATCAGTACAGGGGAATGTTTCATGCTCTGAGTACTGTGCTCAGAGAAGAAGGTCCACGTGCTTTATATAAGGGCTGGCTGCCTTCAGTAATTGGAGTTATTCCTTATGTGGGTCTCAACTTTGCTGTCTATGAGTCTCTAAAAGAATGGTTAATTGAATCCAAACCATTTGGTCTAGTTCAAGATTCTGAGTTGAGTGTGACAACACGCCTGGCTTGTGGTGCTGCTGCTGGAACTGTTGGACAAACTGTTGCTTATCCTCTTGATGTCATTCGCCGAAGAATGCAGATGGTTGGTTGGAACCATGCTGCTTCTGTTCTTACCGGAGATGGAAGAGGCAAAGTCCCGCTTGAATACACTGGAATGGTTGATGCATTTAGGAAAACCGTTAGGCATGAAGGATTTGGTGCATTATACAAGGGTCTGGTGCCCAATTCTGTTAAGGTGGTCCCATCCATTGCACTTGCATTTGTAACATATGAGGTGGTGAAGGACATTTTAGGAGTTGAGATCAGAATATCAGACTAA 1071 0.4603 MASEDVKTTGESAVTKIVSLAEEAKLAREGVVKAPNYALASICKSLVAGGVAGGVSRTAVAPLERLKILLQVQNPHNIKYNGTIQGLKYIWRTEGFRGLFKGNGTNCARIVPNSAVKFFSYEQASKGILYMYQQQTGNEDAQLTPVLRLGAGACAGIIAMSATYPMDMVRGRITVQTEKSPYQYRGMFHALSTVLREEGPRALYKGWLPSVIGVIPYVGLNFAVYESLKEWLIESKPFGLVQDSELSVTTRLACGAAAGTVGQTVAYPLDVIRRRMQMVGWNHAASVLTGDGRGKVPLEYTGMVDAFRKTVRHEGFGALYKGLVPNSVKVVPSIALAFVTYEVVKDILGVEIRISD* 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g1796 356 Pfam Mitochondrial carrier protein 143 234 IPR018108 -
Lja3g1796 356 Pfam Mitochondrial carrier protein 245 348 IPR018108 -
Lja3g1796 356 Pfam Mitochondrial carrier protein 41 127 IPR018108 -
Lja3g1796 356 ProSiteProfiles Solute carrier (Solcar) repeat profile. 143 231 IPR018108 -
Lja3g1796 356 PANTHER BNAA09G39370D PROTEIN 1 351 - -
Lja3g1796 356 ProSiteProfiles Solute carrier (Solcar) repeat profile. 246 347 IPR018108 -
Lja3g1796 356 ProSiteProfiles Solute carrier (Solcar) repeat profile. 40 127 IPR018108 -
Lja3g1796 356 Gene3D Mitochondrial carrier domain 38 350 IPR023395 -
Lja3g1796 356 SUPERFAMILY Mitochondrial carrier 41 343 IPR023395 -
Lja3g1796 356 PRINTS Mitochondrial carrier protein signature 45 58 IPR002067 GO:0055085
Lja3g1796 356 PRINTS Mitochondrial carrier protein signature 58 72 IPR002067 GO:0055085
Lja3g1796 356 PRINTS Mitochondrial carrier protein signature 102 122 IPR002067 GO:0055085
Lja3g1796 356 PRINTS Mitochondrial carrier protein signature 158 176 IPR002067 GO:0055085
Lja3g1796 356 PRINTS Mitochondrial carrier protein signature 204 222 IPR002067 GO:0055085
Lja3g1796 356 PRINTS Mitochondrial carrier protein signature 255 277 IPR002067 GO:0055085
Lja3g1796 356 PANTHER SOLUTE CARRIER FAMILY 25 1 351 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g1796 Lja-Chr3 20285957 20291801 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g1796 17 351 EF-hand Containing Proteins AT5G51050 37.168 3.00e-67 218
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g1796 K14684 - gmx:100814032 653.284
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g1796 3 20285957 20291801 Lja3g1796 3 20285957 20291801 ECH
Lja1g0111 1 953472 958576 Lja3g1796 3 20285957 20291801 PCT