Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g0111 ATGGCTTCAGATTCGAAGATGGTCAATCTGGCCGAGGAAGCGAAAGCGAAGCTCGCTAGTGAAGGTGTCAAGGCTCCCAGCTATGCTCTTATGAGCATCTGCAAATCCCTCGTCGCCGGTGGAGTCGCCGGAGGAGTATCACGAACGGCAGTTGCTCCACTGGAACGCATGAAAATTTTGCTACAGGTCCAGAATCCTCACAACATCAAATACAATGGAACAATTCAAGGACTCAAATATATATGGAGGACTGAAGGTTTCCGTGGGCTGTTCAAAGGAAATGGTACTAATTGTGCTCGAATCGTCCCTAATTCTGCAGTGAAGTTCTTCAGTTATGAGCAAGCTTCCAAAGGTATACTACATCTGTATCGGCAGAAAACTGGAAAGGAGGATGCTGAGCTTACTCCTCTTTTACGTCTTGGGGCTGGAGCATGTGCTGGAATAATTGCCATGTCTGCAACTTATCCAATGGACATGGTCCGAGGCAGGATAACTGTACAGACAGAGAAGTCCCCTTACCAATACAGAGGAATGTTCCATGCTCTGTCAACTGTGCTTAGAGAAGAAGGTCCACGTGCTTTATATAAAGGCTGGCTTCCTTCAGTCATTGGAGTTGTTCCTTATGTGGGTCTTAACTTTGCTGTGTATGAATCTTTGAAAGATTGGTTAATAAAATCAAAACCATTTGGTTTAGCTCAAGATTCTGAGTTGGGTGTGACAACTCGCCTGGCATGTGGTGCTGCAGCTGGAACCATTGGACAAACCGTTGCTTATCCTCTTGATGTTATTCGTCGAAGAATGCAGATGGTGGGTTGGAATCATGCTGCTTCTGTTGTAGCTGGTGATGGAAGAGGCAAGACACCACTTGAATACACGGGCATGGTTGATGCATTTAGGAAAACTGTTCGGTATGAGGGATTTGGCGCATTATACAAGGGTCTGGTGCCCAACTCTGTAAAGGTGGTCCCATCCATAGCACTGGCGTTTGTAACATATGAGATGGTGAAGGACATTTTAGGAGTGGAGATCAGAATATCAGACTGA 1044 0.4579 MASDSKMVNLAEEAKAKLASEGVKAPSYALMSICKSLVAGGVAGGVSRTAVAPLERMKILLQVQNPHNIKYNGTIQGLKYIWRTEGFRGLFKGNGTNCARIVPNSAVKFFSYEQASKGILHLYRQKTGKEDAELTPLLRLGAGACAGIIAMSATYPMDMVRGRITVQTEKSPYQYRGMFHALSTVLREEGPRALYKGWLPSVIGVVPYVGLNFAVYESLKDWLIKSKPFGLAQDSELGVTTRLACGAAAGTIGQTVAYPLDVIRRRMQMVGWNHAASVVAGDGRGKTPLEYTGMVDAFRKTVRYEGFGALYKGLVPNSVKVVPSIALAFVTYEMVKDILGVEIRISD* 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g0111 347 ProSiteProfiles Solute carrier (Solcar) repeat profile. 134 222 IPR018108 -
Lja1g0111 347 PANTHER SOLUTE CARRIER FAMILY 25 5 342 - -
Lja1g0111 347 ProSiteProfiles Solute carrier (Solcar) repeat profile. 237 338 IPR018108 -
Lja1g0111 347 SUPERFAMILY Mitochondrial carrier 31 334 IPR023395 -
Lja1g0111 347 Gene3D Mitochondrial carrier domain 29 341 IPR023395 -
Lja1g0111 347 PRINTS Mitochondrial carrier protein signature 36 49 IPR002067 GO:0055085
Lja1g0111 347 PRINTS Mitochondrial carrier protein signature 49 63 IPR002067 GO:0055085
Lja1g0111 347 PRINTS Mitochondrial carrier protein signature 93 113 IPR002067 GO:0055085
Lja1g0111 347 PRINTS Mitochondrial carrier protein signature 149 167 IPR002067 GO:0055085
Lja1g0111 347 PRINTS Mitochondrial carrier protein signature 195 213 IPR002067 GO:0055085
Lja1g0111 347 PRINTS Mitochondrial carrier protein signature 246 268 IPR002067 GO:0055085
Lja1g0111 347 ProSiteProfiles Solute carrier (Solcar) repeat profile. 31 118 IPR018108 -
Lja1g0111 347 Pfam Mitochondrial carrier protein 236 339 IPR018108 -
Lja1g0111 347 Pfam Mitochondrial carrier protein 135 226 IPR018108 -
Lja1g0111 347 Pfam Mitochondrial carrier protein 32 118 IPR018108 -
Lja1g0111 347 PANTHER BNAA09G39370D PROTEIN 5 342 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g0111 Lja-Chr1 953472 958576 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g0111 37 342 EF-hand Containing Proteins AT5G51050 39.088 2.27e-67 218
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g0111 K14684 - gmx:100777048 630.172
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g0111 1 953472 958576 Lja3g1796 3 20285957 20291801 PCT