Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g1792 ATGGTGAAGAAAATGAGGTCTGATTTGGGCCCATTTTCCCTGCAAAAGCACAACCATGTATGTGCCAAGTTTGCAGCATCATTTTTCTTGGTGGGTCTCGCTTTTCGCCTTCTCTTGTGGGATTCATTCAGCTTCTCATCATCACTAGTGAAGAAGACACTACCACCTCCTCTTGCAGAAGCAAAAGCAGAGTCCCCTGTTTTTTCTTTACCTCTTCAGGCATCTGATTTTGTTGAATTTCCAGGATACAACCAGAGCCAAACCTCTCAGGATGAGAAATGTGATCTTTTTGTGGGAGATTGGGTACCAGATCTATCTGGTCCAGTTTACACCAATGAGAGTTGCCAAGTGATTGAACACCATCAAAACTGCATGAAGAATGGACGCACTGATTCAGGGTACCTTTACTGGAGGTGGAAGCCACGACACTGTGAGTTACCAAAGTTCAATCCAAAGAATTTTCTCAATTTTATGAGAAATAAAGCAATGGCATTTGTTGGTGATTCCATCTCCAGGAACCATGTGCAGTCCCTACTTTGCATTCTCTCACAGGTGGAACCAGCTGTTGAGGTCTACCATGACAAGGAATATAGATCAAAGATATGGAAATTCCCCTCTCACAACTTCACACTCTCAGTAATTTGGACCCCTTTCCTTATCAAAGCAGCTATATTTGAAGACATGAATGGGGTAACCTCTTCAGAGATTCAGCTTTCTCTTGACAATCTCGACACCTTATGGACCAATCAATATAAGAATTTCGATTATGTGGTAATTGGTGGGGGAAAATGGTTTCTCAAGACTGCAATATACCATGAAAACAACACAGTCACAGGCTGCCATTACTGTCCTGGGAAGAATCTAACAGAGCTAGGATTCGACTACGCATACCGCAAAGCACTAGAACTTGTTTTCAACTTCTTCACAAGCTCTGATCACAAAGCCACTGTTTTCTTCAGAACCACCACACCTGACCACTTTGAGAATGGGGAGTGGTTTAGTGGAGGGTATTGTAATAGAACCGTGCCCTTCAAAGAGGGTCAGATAGATATGGTTGATGTAGATTCCATCATGCGAGGTATCGAAGTAGAAGAATTTGAGAAGGCGAATTCGCAAGGATCTGAACAAGGGGTGAAGTTGAAACTCTTGGACACAACTCATCTTTCATTGTTAAGACCGGATGGACACCCAGGACCTTACCGGCAGTTCCAGCCATTTGCAAAAGATAAGAATGCTAAAGTTCAAAATGATTGTCTACATTGGTGTTTGCCGGGACCAATTGACTCATGGAATGACATAGTAATGGAAATGCTAGTCAATTCTTAG 1326 0.4261 MVKKMRSDLGPFSLQKHNHVCAKFAASFFLVGLAFRLLLWDSFSFSSSLVKKTLPPPLAEAKAESPVFSLPLQASDFVEFPGYNQSQTSQDEKCDLFVGDWVPDLSGPVYTNESCQVIEHHQNCMKNGRTDSGYLYWRWKPRHCELPKFNPKNFLNFMRNKAMAFVGDSISRNHVQSLLCILSQVEPAVEVYHDKEYRSKIWKFPSHNFTLSVIWTPFLIKAAIFEDMNGVTSSEIQLSLDNLDTLWTNQYKNFDYVVIGGGKWFLKTAIYHENNTVTGCHYCPGKNLTELGFDYAYRKALELVFNFFTSSDHKATVFFRTTTPDHFENGEWFSGGYCNRTVPFKEGQIDMVDVDSIMRGIEVEEFEKANSQGSEQGVKLKLLDTTHLSLLRPDGHPGPYRQFQPFAKDKNAKVQNDCLHWCLPGPIDSWNDIVMEMLVNS* 442
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g1792 441 Pfam PMR5 N terminal Domain 92 145 IPR025846 -
Lja3g1792 441 PANTHER PROTEIN TRICHOME BIREFRINGENCE-LIKE 9-RELATED 49 439 IPR029962 GO:0016413
Lja3g1792 441 Pfam GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p 146 437 IPR026057 GO:0016740
Lja3g1792 441 PANTHER PROTEIN TRICHOME BIREFRINGENCE-LIKE 26 49 439 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g1792 Lja-Chr3 20222388 20225201 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g1792 - - gmx:100305942 734.947
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g1792 3 20222388 20225201 Lja3g1792 3 20222388 20225201 ECH
Lja1g0103 1 855911 857633 Lja3g1792 3 20222388 20225201 PCT