Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g1771 ATGGCACCAAGAAACACTCGCGGAAAGGCTAAGGGTGAGAAGAAGAAGAAGGAAGAAAAGGTTCTTCCAGTTGTGATAGATGTCACTGTGAACCTTGTCGATGAAACTCAAGTTGTTCTCAAGGGCATATCAACTGATAGAACAATAGATGTTCGTCGACTTTTAACAGTTAATACAGAGACATGTCATATCACTAATTTCTCCCTATCACATGAGGTTAGAGGGCCTCGTTTGAAGGATTCGGTGGATGTTTCCGCACTGAAGCCCTGCTTCCTCACTCTAGTGGAAGAGGATTACGATGAAGAACGAGCGGTGGCTCACGTCCGAAGACTCCTCGACATCGTCGCCTGCACCACCACCTTCGGTCCGTCGTCGACGCCGAAGAATGCCGCCACCACCGCGCCGAAGTCCAAACCTCCGCCGGCCAATCCGTCACCGAAAGATGCCACCGCGGCGGCGGCGGCAGCCGCAGCAGACGGAGACGGCGAGATAAGCCACTCTTGCCCTAAGCTGGACAGTTTCTACGAGTTTTTCTCGCTTTCGAATCTCACTGCACCGATCCAATATGTGAAGAAAGCTTCGAAGCGCCACGTGGAGGAGATAGCAGAGGCTGATCATCTGCTTTCGCTCGATGTGAAGCTGTGTAATGGGAAAGTGGTGCATGTTGAAGCTTGCAGAAAGGGGTTTTATAGCATTGGGAAGCAGCGGATTCTGTGTCACAATCTTGTTGATTTGTTGAGACAGCTTAGCAGAGCTTTTGACCATGCGTACGATGATCTCTTGAAGGCATTTCTAGAACGCAACAAGTTTGGGAATCTCCCCTATGGCTTCAGAGCCAACACATGGCTTGTTCCTCCTATTGCAGCTCATTCACAATCAGTTTTTCCTTCTCTCCCTGTGGAGGATGAAACTTGGGGTGGAAATGGTGGTGGTCTTGGAAGAGACGGGAAATTTGATTTGATTCCTTGGGCCAATAAATTTTCATATATTGCATCTATGTCTTGCAAGACAGCAGAAGAAAGGCAAATTCGTGATAGAAAAGCATTTCTACTGCACAGCCTGTTTGTTGATGTTGCCATTTTCAGAGCAATTAGAGCTGTTAAACATGTTATGGAAGAGCACAATTTTAGCTGCTCGGCTGCAGAAAATGGAATTATTTACACTGAGAAAGTAGGTGACTTGAGTATCAGAATCTTGAAAGATGGTTCTGTGGCGAGCTGTAAGATTGATACCAAGATTGATGGAGTTGAAGCTACTGGAGTAAATCAAAAGGATTTATTAGAACGAAATCTACTGAAAGGAATCACAGCTGATGAAAATACAGCAGCTCATGATATTACCACTTTAGGTGTTGTCAATGTAAGATATTGTGGTTATGTGGTTGTTGTGAAAGTTGAAGATGGAGGCTCTGAAAATAACAATTCTCCATCTGATCAAAATGATGAATTGTTTGATCAGCCAGAGGGTGGTGCCAACGCACTAAACATTAACAGTTTAAGATTACTTCTTCACAGCACAACCCAACCAGAGAACAATAAGCAGATGACTCAGACACAAATGTTTGAAGAGCTTAGTGGTTCCAATGCTTTTGTGGAGAAACTGATTAAAGAAAGCCTTTCTAAGCTTGAGGAAGAGGAACTGGGTTTGGACTATTTCGTAAGATGGGAGCTTGGAGCTTGCTGGATACAACATTTGCAAGACCAAAACAGTGCAGACAAAGACAAGAAACCATCTTTGGAGAAAGCTAAGAATGAAATGAAGGTCGAGGGTCTTGGGAAACCGCTCAAGGCCCTCAAGAATAATAAAAAGAAATCTGATTCAAGCAATACTATGCTTGCATCTGAATATTCAAAGCCTAATCAGGAGGTTGAAAATGCTCCATTGCCCTCAATTGAATCCCAGCCTGATACCACTGCAGCTGATAATGAACTTTTGCTAAAAGGGATATTATCTGCAGCAGCTTTTATCCGATTGAAAGAATCAGGAGCTGGACTTCACTGCAAGTCTATTCAAGATTTGATCAACTTATCTCGGAAATATTACCTGGATGTTGCTATCCCTAAACTGGTAGCAGATTTTGGCTCATTGGAACTCTCTCCAGTTGATGGCCGCACCCTAACTGATTTTATGCATACTCGTGGTCTACGCATGCAATCTCTTGGACATGTTGTCAAGCTTTCGGAAAAGCTTTCACATGTGCAGTCACTTTGTATTCATGAGATGATAGTTCGAGCTTTCAAGCACATCCTTAGGGCAGTGATTTCTGCTGTTGTTGACAAGGAGAAAATGGCTACATCAATAGCTGGTGCATTGAATTTGCTACTTGGTGTTCCTGAAAATAGAGAATCAGATAAATCATGCGAACTTCACCCCATTGTATGGAGATGGCTAGTATTGTTTTTGAAGAAACGGTTTGACTGGGATCTTAGCAGGTTAAATTACAAAGATGTGAGGAAATTTGCAATTTTACGAGGCTTGTGTCACAAGGTGGGAATTGAGCTTGCTCCAAGGGATTTTGATATGGATTCTCCATTTCCCTTCCAAAAATCTGACATTGTCAGCTTGGTCCCAGTTCACAAGCAAGCAGCATGCTCATCTGCAGATGGAAGGCAGCTCCTAGAGTCATCCAAGACAGCTTTAGATAAGGGAAAGCTTGAAGATGCTGTTACCTATGGGACAAAGGCTCTTGCAAAGCTGGTAGCAGTTTGTGGTCCCTACCATCGGATGACAGCGGGAGCATACAGCCTCCTTGCTGTAGTTTTATATCATACTGGAGACTTCAATCAGGCGACAATTTATCAACAAAAAGCTTTGGATATCAATGAGAGAGAGTTAGGTCTGGATCATCCTGATACCATGAAGAGCTATGGGGATCTTGCAGTTTTCTATTACAGACTTCAACACACAGAGCTGGCTCTGAAGTATGTGAAGCGTGCTTTATATCTGTTGCATCTGACTTGTGGTCCATCTCATCCAAATACTGCTGCAACATACATTAATGTTGCTATGATGGAGGAGGGTTTAGGAAATGTACATGTTGCTCTCAGATATCTTCACAAAGCATTAAAGTGCAACCAAAGATTACTTGGTGCAGATCATATTCAGACAGCTGCAAGTTATCATGCAATAGCAATAGCACTCTCATTGATGGAAGCATACCCATTGAGTGTGCAGCATGAGCAAACAACTTTGCAAATTCTCCGAACAAAACTTGGCCCTGACGACTTGCGTACACAGGATGCTGCAGCTTGGCTTGAGTATTTTGAGTCCAAGGCTTTTGAACAACAAGAAGCTGCTCGTAATGGTACTCGAAAACCTGATGCATCAATAGCTAGCAAGGGTCATCTAAGTGTGTCAGATCTTCTTGACTACATTAATCCTAATCACGATTCCAAAGGGAGGGATGCAGCAGCCAAGAGAAGAAGCCAGGTAACAAAGGTTAAGGCTTCAACCTACCAGAACATTGGCTCAGCAAGTTCTGATGAGTCTTCAAAAGAAATTCAAAAAGAGGTTTCAGATGAAGATGTACCTATACCTGACCCAGGAGGTAGTGCAGATTCTGAGCCTGAGAACAACTCTGCACCTGACTCAGAAGAGCATATTTGTGAAAAGATATCTGATGAAAAGCCACAAATGTCTGGTCAAATACTGTCTGAAGCTCCTGCTGATGGAGATGATGGATGGCAACCTGTTCAAAGACCAAGATCAGCTGGCTCATATGGTCGGCGACTGAAGCAGAAACGGCTTGGAAAAGTTCATAATTATCAGAAGAATGTTGAAACTAGTGCAGAATACCCTTTGGGAAGGAGTGATAATCAGAATAGTAGGTATTATTTCTTGAAGAAGCGGTCAATGTACCATGGGGGCTCTGCAGATAATCATGCTTTCAACATCACCCAAGGCTCTAAATTTGGAAGGAAAGTAGTCAAAGCTGTTACATACAGGGTTAAGTCTATGCCCTCAGCTCCCAAGACTGCTTCAGATGAGACATTAGAAATTGGTGACAAGCAACTAAGTTCTCATTCAGAACTTGATTCTAATGATGACCATCCAATTAAGACTTCAGTAGTTAGTCTTGGAAAATCTCCTTCGTACAAGGAAGTAGCATTGGCTCCTCCGGGGACAATCTCCAAGTTCCAGGTCTATAATCCTCAAAGTGAGATTCCTGAATGCCGTGAACATGATGTTGGAAAACATAAAGAGGAAGATGTTGAAGCTCATAAAAGTATTAATCCAACCCCGAAGGAGGTAAATGATATGTCTCAAGAGAAGTGTGATGATCCTTTATCAGATTCTGTAGATGATACACAAGATGATATTGTGGTTGCTCCTGAAAAGAAAGCGGAAAGTCAGTTGATTGAAGTTGTACAAGAAAATTCTGGGAGTGCTGAGGTCCTTGAATCTGTGGATGTTGATGCTCAAGGAACAGATGATAATAGCATAGTGATTGATGCTGTACAGAATCATTTGGAGTCTTACAAACAAGAACCTAATGCAACTAATTCATCTGGCAGTTTTGAACCTAGTGATGATACAAAGTCCAATTCACCAGGTGGTGATGATTCATCATCAAGTCCGAGTCATGCCGGGGTCATCGCCTATAAGAAATTGTCTGCATCTGCTGCTCCATTCAACCCGTCACCTGCCATTGCACGTGCTGCTCCAATTGCCATGAATATAACTCATCTTTCTGGTCCTGGTCCTGTTCCTGCTATTGGCCCCTGGGCACTAAACATGCCGGGACCTGCTACTTTGCTACCTGCAGGTACCCCAATGTGTTCCTCTCCACACCACGCATATCCATCACCTCCCACAACACCAAATATGATTCAACCATTGCCTTTCATGTATCCTCCTTTTACCCAACCTCAGTCAATACCAACCAACAACTTTCCGGTCAGTAATGCCTTTCATGCCAATCATTTTACATGGCAATGTAATTTGAACCCCGCCATATCTAAGTTTGGTCCCAGTGCAGTTTGGCCTGGTTGTCATCCTATGGAATTTTCTCATCCGGTACCTATTGTTGAACCAATCCCTGATATCATTTCAGAGCCACAAGTGCAGTATCATGCAGTTGAAAGTCCCCGTTCAGCTTCAGTTCTGCCTGAGGATATTGATAACATAGGGGATTCCAATAAAGAGATAAAAGCTTTAACATCCGAGGCAAGTGAAGATGAAGTGGTGAGAGCTGGTTCGGAAAGTATAAAAGAAAATGGTAATCCAAATTTTCCTGGGACAGAAAATGCTGAGAACAAGCCAAATCTAAACATTGGCTCGAATGGCAGCAGTAGCAGCAGTGAAACAAACATGGATGGTGAGAAAACATTCAGCATTTTGATTCGAGGAAAGAGAAACCGAAAGCAGACTCTCAGAATGCCAATAAGTTTGCTTACACGGCCTCATGGCTCTCAGTCGTTTAAGGTCATATATAACCGTGTAGTTAGAGGAAGTGATGCTCCCAAGTCCATCAATTTCTCTTCAAGTAAACATTGTACAGCTACTGCTTAA 5511 0.4315 MAPRNTRGKAKGEKKKKEEKVLPVVIDVTVNLVDETQVVLKGISTDRTIDVRRLLTVNTETCHITNFSLSHEVRGPRLKDSVDVSALKPCFLTLVEEDYDEERAVAHVRRLLDIVACTTTFGPSSTPKNAATTAPKSKPPPANPSPKDATAAAAAAAADGDGEISHSCPKLDSFYEFFSLSNLTAPIQYVKKASKRHVEEIAEADHLLSLDVKLCNGKVVHVEACRKGFYSIGKQRILCHNLVDLLRQLSRAFDHAYDDLLKAFLERNKFGNLPYGFRANTWLVPPIAAHSQSVFPSLPVEDETWGGNGGGLGRDGKFDLIPWANKFSYIASMSCKTAEERQIRDRKAFLLHSLFVDVAIFRAIRAVKHVMEEHNFSCSAAENGIIYTEKVGDLSIRILKDGSVASCKIDTKIDGVEATGVNQKDLLERNLLKGITADENTAAHDITTLGVVNVRYCGYVVVVKVEDGGSENNNSPSDQNDELFDQPEGGANALNINSLRLLLHSTTQPENNKQMTQTQMFEELSGSNAFVEKLIKESLSKLEEEELGLDYFVRWELGACWIQHLQDQNSADKDKKPSLEKAKNEMKVEGLGKPLKALKNNKKKSDSSNTMLASEYSKPNQEVENAPLPSIESQPDTTAADNELLLKGILSAAAFIRLKESGAGLHCKSIQDLINLSRKYYLDVAIPKLVADFGSLELSPVDGRTLTDFMHTRGLRMQSLGHVVKLSEKLSHVQSLCIHEMIVRAFKHILRAVISAVVDKEKMATSIAGALNLLLGVPENRESDKSCELHPIVWRWLVLFLKKRFDWDLSRLNYKDVRKFAILRGLCHKVGIELAPRDFDMDSPFPFQKSDIVSLVPVHKQAACSSADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGADHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRTKLGPDDLRTQDAAAWLEYFESKAFEQQEAARNGTRKPDASIASKGHLSVSDLLDYINPNHDSKGRDAAAKRRSQVTKVKASTYQNIGSASSDESSKEIQKEVSDEDVPIPDPGGSADSEPENNSAPDSEEHICEKISDEKPQMSGQILSEAPADGDDGWQPVQRPRSAGSYGRRLKQKRLGKVHNYQKNVETSAEYPLGRSDNQNSRYYFLKKRSMYHGGSADNHAFNITQGSKFGRKVVKAVTYRVKSMPSAPKTASDETLEIGDKQLSSHSELDSNDDHPIKTSVVSLGKSPSYKEVALAPPGTISKFQVYNPQSEIPECREHDVGKHKEEDVEAHKSINPTPKEVNDMSQEKCDDPLSDSVDDTQDDIVVAPEKKAESQLIEVVQENSGSAEVLESVDVDAQGTDDNSIVIDAVQNHLESYKQEPNATNSSGSFEPSDDTKSNSPGGDDSSSSPSHAGVIAYKKLSASAAPFNPSPAIARAAPIAMNITHLSGPGPVPAIGPWALNMPGPATLLPAGTPMCSSPHHAYPSPPTTPNMIQPLPFMYPPFTQPQSIPTNNFPVSNAFHANHFTWQCNLNPAISKFGPSAVWPGCHPMEFSHPVPIVEPIPDIISEPQVQYHAVESPRSASVLPEDIDNIGDSNKEIKALTSEASEDEVVRAGSESIKENGNPNFPGTENAENKPNLNIGSNGSSSSSETNMDGEKTFSILIRGKRNRKQTLRMPISLLTRPHGSQSFKVIYNRVVRGSDAPKSINFSSSKHCTATA* 1837
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g1771 1836 CDD CLU-central 700 841 IPR033646 -
Lja3g1771 1836 SMART tpr_5 953 986 IPR019734 GO:0005515
Lja3g1771 1836 SMART tpr_5 995 1028 IPR019734 GO:0005515
Lja3g1771 1836 SMART tpr_5 911 944 IPR019734 GO:0005515
Lja3g1771 1836 Pfam Tetratricopeptide repeat 910 980 - -
Lja3g1771 1836 Pfam Tetratricopeptide repeat 994 1068 - -
Lja3g1771 1836 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN 1 1818 - -
Lja3g1771 1836 MobiDBLite consensus disorder prediction 1396 1412 - -
Lja3g1771 1836 MobiDBLite consensus disorder prediction 1329 1350 - -
Lja3g1771 1836 MobiDBLite consensus disorder prediction 1193 1207 - -
Lja3g1771 1836 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT EIF-3 1 1818 IPR027523 GO:0006996
Lja3g1771 1836 Pfam Translation initiation factor eIF3 subunit 135 698 840 IPR033646 -
Lja3g1771 1836 MobiDBLite consensus disorder prediction 468 489 - -
Lja3g1771 1836 Gene3D Tetratricopeptide repeat domain 986 1108 IPR011990 GO:0005515
Lja3g1771 1836 Pfam Mitochondrial function, CLU-N-term 50 115 IPR028275 -
Lja3g1771 1836 MobiDBLite consensus disorder prediction 1396 1445 - -
Lja3g1771 1836 SUPERFAMILY Hypothetical protein c14orf129, hspc210 180 271 IPR023231 -
Lja3g1771 1836 MobiDBLite consensus disorder prediction 1721 1772 - -
Lja3g1771 1836 SUPERFAMILY TPR-like 948 1075 IPR011990 GO:0005515
Lja3g1771 1836 Gene3D Tetratricopeptide repeat domain 870 985 IPR011990 GO:0005515
Lja3g1771 1836 ProSiteProfiles TPR repeat profile. 911 944 IPR019734 GO:0005515
Lja3g1771 1836 MobiDBLite consensus disorder prediction 568 592 - -
Lja3g1771 1836 MobiDBLite consensus disorder prediction 1144 1162 - -
Lja3g1771 1836 MobiDBLite consensus disorder prediction 1127 1142 - -
Lja3g1771 1836 MobiDBLite consensus disorder prediction 604 635 - -
Lja3g1771 1836 MobiDBLite consensus disorder prediction 123 149 - -
Lja3g1771 1836 MobiDBLite consensus disorder prediction 1317 1358 - -
Lja3g1771 1836 MobiDBLite consensus disorder prediction 568 635 - -
Lja3g1771 1836 MobiDBLite consensus disorder prediction 1736 1772 - -
Lja3g1771 1836 MobiDBLite consensus disorder prediction 1493 1528 - -
Lja3g1771 1836 MobiDBLite consensus disorder prediction 1123 1245 - -
Lja3g1771 1836 MobiDBLite consensus disorder prediction 468 482 - -
Lja3g1771 1836 ProSiteProfiles Clueless (Clu) domain profile. 301 576 IPR025697 -
Lja3g1771 1836 SUPERFAMILY TPR-like 877 982 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g1771 Lja-Chr3 19898962 19911468 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g1771 K03255 - gmx:100808136 2758.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g1771 3 19898962 19911468 Lja3g1771 3 19898962 19911468 ECH
Lja6g2791 6 56999777 57000319 Lja3g1771 3 19898962 19911468 PCT