Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g1762 ATGGAAGAGAAAGTTCAAAACTCCTTTCTCTTTTTCCTATTAGTTATATTCCTCACTGTCTTTACTGCTTCATCAGACTCATTTCCCTCACTCATATGGCCTGAATCCGAACCCTTAGAGTTCGACCCGGAATCCTCCAACACCCTAACTCTTCCCCTCCACCATGTAGACGTTCTCTTCTTTAACAAAACCTCAGAGGAGCTCTTCTACCTCATGCTTCAAAGAGACGCTGCCAGGGTCAAAGCCTTCACTTCCAAAGCTGCAGGAGAAGAATCCAATAAGACCCAACTAAGATTTCCTAGATCCAGGAAGGGTTTCAGAAGCCCAATTATCTCGGGTTTCCCACATGGAACCGGCGCGTACTACACACGCATTGGCATTGGCACTCCCCCAAGGTACGTGAATCTATTTCTTGACACTGGAAGCGACGTCATTTGGCTCCAGTGCAAGCCTTGCAAGATTTGCTACAATCAGACAGACGAGATTTTTGACCCGGAAAAATCCACCTCCTTCGACGAAATCTCGTGCAACTCCTCCCTTTGCCAACTACAAGACCAGCCGGGATGCAACCAGAAAAATCAATGCCAATACCAAGTCACCTACGGCGATGGTTCCGGCACATCCGGCGATCTTTCCACTGAAACGCTGACGGTTGGAAAAACCCGCCTACAACGTATAACATTCGGCTGCAGCCATGATAATGAGGGTGATTTTGGTGGAACCGCCGGTTTAATGGGTATTGGTGGTGGGAGCCTGTCATTTCTAGGTCAAGTCGGAACTCGGTTTAACAAAAAATTCTCATATTGTTTAGTGGACCGATCCCATTCCCAAAAACCATCTTCCATCATTTTTGGCGATTCGGCTATCCCACGAACCGCGCGATTCACTCCTTTGCTCAAGAACCCGAACCCTCGTCTTAATGGATTCTATTACGTTGAGCTCCTTGGCATCAGTGTGGATGGCATCCCGGTTCGCGGTATTTCACCTTCCCTCTTCCGGTTTGACCAATATGGTAATGGAGGCGTCATCATCGATTCAGGCACAACCGTGACACAACTCATTAAACCGGCTTACTTGGCTTTCAGAAACGCTTTTCGGGTTGCGGCTGCGCATTTGAAGCGAGGGCCCGAGACCGAGTCGTTCGATACTTGTTATGACCTATCAGGGCTCAGAGAGGCAAAGGTTCCCACTGTGGTGCTCCATTTTCGGGATGTTGACGTGTCCTTGCCGGCGAAGAACGTTCTTGCTACGTTGAAAACCAACAAGACCGGACCTTCATGCTTCGCATTCGCTCAATGGGGTGGTCCATTTTCCATAATCGGTAACATCCAACAACAAGGGATCCGCATCGCGTATGACTTGGCTGGATCTCGGGTCGGATTTGCCCCAAGAGAGTGCGTGTGA 1404 0.49 MEEKVQNSFLFFLLVIFLTVFTASSDSFPSLIWPESEPLEFDPESSNTLTLPLHHVDVLFFNKTSEELFYLMLQRDAARVKAFTSKAAGEESNKTQLRFPRSRKGFRSPIISGFPHGTGAYYTRIGIGTPPRYVNLFLDTGSDVIWLQCKPCKICYNQTDEIFDPEKSTSFDEISCNSSLCQLQDQPGCNQKNQCQYQVTYGDGSGTSGDLSTETLTVGKTRLQRITFGCSHDNEGDFGGTAGLMGIGGGSLSFLGQVGTRFNKKFSYCLVDRSHSQKPSSIIFGDSAIPRTARFTPLLKNPNPRLNGFYYVELLGISVDGIPVRGISPSLFRFDQYGNGGVIIDSGTTVTQLIKPAYLAFRNAFRVAAAHLKRGPETESFDTCYDLSGLREAKVPTVVLHFRDVDVSLPAKNVLATLKTNKTGPSCFAFAQWGGPFSIIGNIQQQGIRIAYDLAGSRVGFAPRECV* 468
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g1762 467 Pfam Xylanase inhibitor N-terminal 121 286 IPR032861 -
Lja3g1762 467 Gene3D Acid Proteases 98 285 IPR021109 -
Lja3g1762 467 SUPERFAMILY Acid proteases 115 466 IPR021109 -
Lja3g1762 467 Pfam Xylanase inhibitor C-terminal 310 462 IPR032799 -
Lja3g1762 467 ProSiteProfiles Peptidase family A1 domain profile. 121 462 IPR033121 -
Lja3g1762 467 PANTHER ASPARTYL PROTEASES 23 466 IPR001461 GO:0004190|GO:0006508
Lja3g1762 467 PANTHER ASPARTYL PROTEASE FAMILY PROTEIN 2-LIKE 23 466 - -
Lja3g1762 467 Gene3D Acid Proteases 286 467 IPR021109 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g1762 Lja-Chr3 19816021 19817424 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g1762 84 466 Miscellaneous Gene Families AT1G77480 26.521 6.15e-27 110
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g1762 K22683 - gmx:100791511 528.094
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g1762 3 19816021 19817424 Lja3g1762 3 19816021 19817424 ECH
Lja1g0084 1 708763 710629 Lja3g1762 3 19816021 19817424 PCT