Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g0084 ATGGAGGAAAGGAAAATGAAACCCAACAACAATGCCCTTCTTTTCTTTCTCTTAACCATCTCCTTCTCACTCTCCACCGCTGCTGTATCTCACTTTGAAACCCAATCTCTGACCCTCAACTCTCTCCCCCACCAACCCACCCTCTCATGGCCTGAATCTGAAGAAGAAGAAGAAGAAGAAGAAGAACTCTCCATACCCGAATCCGAAGGATCCGACCCAGAAACACTCTCACTTCAGCTCCACCACATAGACGCACTCTCCTCCACCAAAACCCCTGAACAGCTCTTCCATCTCAGGCTCCAAAGAGACGCTGCCAGAGCTGAATCCTTCTTCACCACCTCCGCCGCAGCTCTCAACAACTCCCACGCGCCCAGATCCGGAGCGGGTTTCAGCAGCTCCATCATCTCCGGTCTAGCCCAGGGAAGCGGCGAGTACTTCACACGCATCGGCGTCGGCACCCCCGCGAGGTACGTCTACATGGTACTCGACACAGGAAGCGACGTCGTTTGGCTCCAGTGTGCACCGTGCCGCAAATGCTACTCCCAGGCTGACCCGGTTTTCGACCCGTCAAAATCCCGCACATACGCCGGGATCCCCTGCGGTGCACCACTCTGCCGGCGACTTGACTCCGCCGGCTGCAACAGCAAGAAGGTTTGCCAGTACCAAGTCTCCTACGGTGATGGATCCTTCACGTTCGGTGATTTCTCCACTGAAACGTTAACGTTCCGGAGATCCAGAGTGACGCGCGTGGCTCTCGGTTGCGGCCATGACAACGAAGGCCTCTTCGTCGGCGCCGCCGGGCTTTTAGGCCTCGGCCGCGGGAGGTTGTCGTTCCCGATCCAAACCGGTCGCCGGTTCAACCAGAAATTCTCGTACTGCCTGGTGGACCGCTCCGCTTCGGCCAAACCATCTTCCGTCGTGTTCGGCGACGCCGCCGTTTCACGAACCGCCAAATTCACACCGCTGCTGAAAAACCCTAAGCTCGACACCTTCTACTACGTTGAGCTTCTCGGGATCAGCGTGGGTGGCACACCAGTTCGCGGCGTCTCCGCCTCGCTCTTCAAGCTCGATCCCACCGGGAACGGTGGCGTGATAATCGATTCTGGCACTTCCGTGACTCGCCTGACCCGGCCCGCGTACACTGCACTGAGAGACGCTTTCCGTCTCGGAGCTTCGCATCTGAAGCGTGCGCCGGAGTTCTCGCTGTTTGACACGTGCTTTGATCTCTCCGGGCAGACGGAGGTGAAGGTTCCGACGGTGGTGCTGCACTTCCGGGGAGCTGATGTGTCGCTTCCGGCGACGAACTACTTGATTCCGGTGGATAGTAGTGGAAGCTTCTGCTTCGCATTCGCCGGAACGATGAGCGGGTTGTCCATTATCGGCAACATCCAGCAGCAAGGCTTCCGGGTCGTTTACGATCTTGGTAGTTCTCGGGTCGGGTTTGCCCCGAGAGGTTGCGCGTGA 1464 0.5786 MEERKMKPNNNALLFFLLTISFSLSTAAVSHFETQSLTLNSLPHQPTLSWPESEEEEEEEEELSIPESEGSDPETLSLQLHHIDALSSTKTPEQLFHLRLQRDAARAESFFTTSAAALNNSHAPRSGAGFSSSIISGLAQGSGEYFTRIGVGTPARYVYMVLDTGSDVVWLQCAPCRKCYSQADPVFDPSKSRTYAGIPCGAPLCRRLDSAGCNSKKVCQYQVSYGDGSFTFGDFSTETLTFRRSRVTRVALGCGHDNEGLFVGAAGLLGLGRGRLSFPIQTGRRFNQKFSYCLVDRSASAKPSSVVFGDAAVSRTAKFTPLLKNPKLDTFYYVELLGISVGGTPVRGVSASLFKLDPTGNGGVIIDSGTSVTRLTRPAYTALRDAFRLGASHLKRAPEFSLFDTCFDLSGQTEVKVPTVVLHFRGADVSLPATNYLIPVDSSGSFCFAFAGTMSGLSIIGNIQQQGFRVVYDLGSSRVGFAPRGCA* 488
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g0084 487 MobiDBLite consensus disorder prediction 52 68 - -
Lja1g0084 487 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 160 171 IPR001969 GO:0004190|GO:0006508
Lja1g0084 487 PANTHER ASPARTYL PROTEASES 57 486 IPR001461 GO:0004190|GO:0006508
Lja1g0084 487 Pfam Xylanase inhibitor N-terminal 145 310 IPR032861 -
Lja1g0084 487 Gene3D Acid Proteases 308 487 IPR021109 -
Lja1g0084 487 SUPERFAMILY Acid proteases 138 486 IPR021109 -
Lja1g0084 487 Pfam Xylanase inhibitor C-terminal 332 482 IPR032799 -
Lja1g0084 487 PANTHER ASPARTYL PROTEASE FAMILY PROTEIN 2-LIKE 57 486 - -
Lja1g0084 487 Gene3D Acid Proteases 130 307 IPR021109 -
Lja1g0084 487 ProSiteProfiles Peptidase family A1 domain profile. 145 482 IPR033121 -
Lja1g0084 487 PRINTS Pepsin (A1) aspartic protease family signature 151 171 IPR001461 GO:0004190|GO:0006508
Lja1g0084 487 PRINTS Pepsin (A1) aspartic protease family signature 364 375 IPR001461 GO:0004190|GO:0006508
Lja1g0084 487 PRINTS Pepsin (A1) aspartic protease family signature 458 473 IPR001461 GO:0004190|GO:0006508
Lja1g0084 487 CDD cnd41_like 144 486 IPR033873 -
Lja1g0084 487 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 364 375 IPR001969 GO:0004190|GO:0006508
Lja1g0084 487 MobiDBLite consensus disorder prediction 41 74 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g0084 Lja-Chr1 708763 710629 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g0084 110 486 Miscellaneous Gene Families AT1G77480 26.812 7.54e-26 107
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g0084 K22683 - gmx:100794269 764.222
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g0084 1 708763 710629 Lja1g0084 1 708763 710629 ECH
Lja1g0084 1 708763 710629 Lja3g1762 3 19816021 19817424 PCT