Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g1729 ATGAGCCAGGGAATGAATGGGGTTGAGGCTAAGAAGAGGCAAGACAAAACAGATTATGATGTGGAGGAGAAAATAGATTATGTGTTCAAGGTGGTGGTGATAGGGGACTCAGCCGTGGGCAAGACTCAAATACTCTCAAGGTTTGCAAAGAATGAGTTCTGCTTTGACTCTAAGTCCACCATTGGAGTTGAATTCCAGACTAGGACTGTCACTATCAATGGCAAAGTCATCAAAGCCCAGATCTGGGATACTGCTGGCCAAGAAAGGTACAGGGCTGTAACTAGTGCATATTACAGAGGTGCATTAGGGGCCATGCTGGTGTATGACATAACTAAGAGGCAATCCTTTGATCATATTGCGAGGTGGGTTGAGGAACTCCGAGCACACACAGATAGCTCCATTGTGATCATGCTAGTTGGGAACAAAGGTGATCTTGTGGACCTGAGAGTGGTCCCAACTGAAGATGCAGTGGAGTATGCAGAGGAGCAGGGCCTGTTCTTCTCAGAGACTTCAGCTCTCAGTGGTGAGAATGTGGAGAGTGCATTTCTCAAATTGCTAGAAGAGATCAACAGGGTGGTCTGTAAAAAGACATTGGAATGTGGTGTTGGGAAAGGGAATGGTGACAATGATGCTGCCACACTCAAAGGATCAAAGATAGCAATAATCTCAGGTCCTGAATTGGAAATTAGTGAGATGAAGAAGTTGTCTTCATGCTCTTGTTAA 723 0.4523 MSQGMNGVEAKKRQDKTDYDVEEKIDYVFKVVVIGDSAVGKTQILSRFAKNEFCFDSKSTIGVEFQTRTVTINGKVIKAQIWDTAGQERYRAVTSAYYRGALGAMLVYDITKRQSFDHIARWVEELRAHTDSSIVIMLVGNKGDLVDLRVVPTEDAVEYAEEQGLFFSETSALSGENVESAFLKLLEEINRVVCKKTLECGVGKGNGDNDAATLKGSKIAIISGPELEISEMKKLSSCSC* 241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g1729 240 SMART rab_sub_5 29 192 - -
Lja3g1729 240 PANTHER - 1 240 - -
Lja3g1729 240 CDD Rab11_like 26 189 - -
Lja3g1729 240 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 24 192 IPR027417 -
Lja3g1729 240 SMART ran_sub_2 34 232 - -
Lja3g1729 240 TIGRFAM small_GTP: small GTP-binding protein domain 28 182 IPR005225 GO:0005525
Lja3g1729 240 ProSiteProfiles small GTPase Rho family profile. 22 194 - -
Lja3g1729 240 ProSiteProfiles small GTPase Rab1 family profile. 24 230 - -
Lja3g1729 240 SMART rho_sub_3 31 188 IPR001806 GO:0003924|GO:0005525
Lja3g1729 240 PRINTS Transforming protein P21 ras signature 29 50 - -
Lja3g1729 240 PRINTS Transforming protein P21 ras signature 52 68 - -
Lja3g1729 240 PRINTS Transforming protein P21 ras signature 132 145 - -
Lja3g1729 240 PRINTS Transforming protein P21 ras signature 167 189 - -
Lja3g1729 240 PRINTS Transforming protein P21 ras signature 70 92 - -
Lja3g1729 240 PANTHER RAS-RELATED PROTEIN RABA3 1 240 - -
Lja3g1729 240 ProSiteProfiles small GTPase Ras family profile. 23 240 IPR001806 GO:0003924|GO:0005525
Lja3g1729 240 Pfam Ras family 30 190 IPR001806 GO:0003924|GO:0005525
Lja3g1729 240 Gene3D - 21 209 IPR027417 -
Lja3g1729 240 SMART ras_sub_4 26 192 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g1729 Lja-Chr3 19343787 19345528 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g1729 K07904 - gmx:100799439 416.001
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g1729 3 19343787 19345528 Lja3g1729 3 19343787 19345528 ECH
Lja1g0062 1 566403 568304 Lja3g1729 3 19343787 19345528 PCT