Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g0062 ATGAATCAGGAAATGAATGGGGTTGAGGCTGAGAAGCTGCACCTGCAAGAGAAGAATGTGCATGATAAAATAGATTATGTGTTTAAGGTGGTGGTGATTGGGGACTCAGCTGTGGGCAAGACTCAAATACTCTCAAGGTTTGCAAAGAATGAATTCTGCTTTGATTCAAAAGCTACCATTGGGGTTGAGTTTCAGACCAGAACTGTCACAATTAATGCCAAAGTCATCAAAGCCCAGATCTGGGACACTGCTGGTCAAGAAAGGTACAGGGCTGTGACAAGTGCATACTACAGAGGAGCATTAGGAGCAATGCTGGTGTATGACATAACAAAAAGACAGTCTTTTGATCATGTGGCTAGGTGGGTTGAGGAGCTGCGAGCACACGCAGACAGCTCCATTGTGATCATGCTAATTGGGAACAAAGGTGATCTTGTGGATCAAAGAGTGGTGCTCTCTGAAGATGCAGTTGAGTTTGCAGAGGAACAAGGCCTTTTCTTCTCTGAGACTTCAGCTCTCACTGGTGAGAACGTGGAGAGTGCGTTTCTCAAGTTACTTCAAGAGATCAATACTAGAGTTGTCTCAAAAAGGTCTTTGTCAGATTGTAATCATGGGAAGAAGACCAATGGTGGCAATAGCCTTAAAGGATCCAAAATTGATGTAATCTCTGGTCCTGAATTGGAAATTACTGAAGTGAAGAAAGTACCTTCATGTTCTTGTTCATCTAGTTAA 729 0.4294 MNQEMNGVEAEKLHLQEKNVHDKIDYVFKVVVIGDSAVGKTQILSRFAKNEFCFDSKATIGVEFQTRTVTINAKVIKAQIWDTAGQERYRAVTSAYYRGALGAMLVYDITKRQSFDHVARWVEELRAHADSSIVIMLIGNKGDLVDQRVVLSEDAVEFAEEQGLFFSETSALTGENVESAFLKLLQEINTRVVSKRSLSDCNHGKKTNGGNSLKGSKIDVISGPELEITEVKKVPSCSCSSS* 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g0062 242 PRINTS Transforming protein P21 ras signature 28 49 - -
Lja1g0062 242 PRINTS Transforming protein P21 ras signature 51 67 - -
Lja1g0062 242 PRINTS Transforming protein P21 ras signature 69 91 - -
Lja1g0062 242 PRINTS Transforming protein P21 ras signature 131 144 - -
Lja1g0062 242 PRINTS Transforming protein P21 ras signature 166 188 - -
Lja1g0062 242 SMART rho_sub_3 30 187 IPR001806 GO:0003924|GO:0005525
Lja1g0062 242 SMART ran_sub_2 33 234 - -
Lja1g0062 242 PANTHER - 1 239 - -
Lja1g0062 242 PANTHER RAS-RELATED PROTEIN RABA3 1 239 - -
Lja1g0062 242 ProSiteProfiles small GTPase Ras family profile. 22 222 IPR001806 GO:0003924|GO:0005525
Lja1g0062 242 TIGRFAM small_GTP: small GTP-binding protein domain 27 181 IPR005225 GO:0005525
Lja1g0062 242 Gene3D - 20 217 IPR027417 -
Lja1g0062 242 ProSiteProfiles small GTPase Rab1 family profile. 23 237 - -
Lja1g0062 242 SMART ras_sub_4 25 191 - -
Lja1g0062 242 ProSiteProfiles small GTPase Rho family profile. 21 193 - -
Lja1g0062 242 SMART rab_sub_5 28 191 - -
Lja1g0062 242 CDD Rab11_like 25 188 - -
Lja1g0062 242 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 24 193 IPR027417 -
Lja1g0062 242 Pfam Ras family 29 189 IPR001806 GO:0003924|GO:0005525
Lja1g0062 242 SMART arf_sub_2 13 192 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g0062 Lja-Chr1 566403 568304 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g0062 K07904 - gmx:100787725 377.867
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g0062 1 566403 568304 Lja1g0062 1 566403 568304 ECH
Lja1g0062 1 566403 568304 Lja3g1729 3 19343787 19345528 PCT