Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g1452 ATGGGTTTGCTTTCTGGGATGTTTATGGGGATACTGTTCGGCATAGCATTGATGGCAGCATGGGAGCGGATGATGAGGTACCGAAGCGCCAAGAGAATTGCAAAGGCAGCTGACATTAAACTCCTTGGATCCCTGAACAGAGACGATTTAAAGAAAATTTGTGGTGATAATCTTCCTGAGTGGATATCTTTTCCTGTATATGAGCAGGTGAAATGGTTAAACAAGATGCTGAGCAAACTTTGGCCATTTGTGGCAGAAGCAGCAACACTGGTGATCAGGGAATCTGTTGAACCACTGCTAGAAGAGTACAGACCTCCTGGAATTACTTCATTGAAGTTCAGCAAGCTGTCACTTGGAAATGTGGCTCCAAAAATTGAAGGTATTCGTGTGCAGAGTCTTACCAAAGGTCAAATCATAATGGACATTGATTTCCGTTGGGGTGGTGATCCCAGTATTATTTTGGCTGTTGAAGCCGCCATGGTTGCGTCGATCCCTATTCAGCTGAAAGATCTAAAGGTTTTCACCATTATCCGTGTTATATTCCAACTTGCTGAAGAGATCCCTTGCATTTCTGCGGTTGTTGTTGCTCTACTTGCTGAGCCAAAGCCCAGGATTGATTATACTCTGAAAGCTGTTGGTGGAAGTTTGACGGCAATTCCTGGAATTTCAGATATGATTGATGATACTGTGAATACAATTGTGACTGATATGCTCCAATGGCCTCATAGGATTGTCGTTCCACTTGGTGGTATACCTGTTGATACCAGTGAACTGGAGCTTAAACCCCAGGGAAGCCTTAAAGTGGTTGTAGTGAAAGCAAATGATTTGAAGAATATGGAAATGATTGGAAAATCAGATCCTTATGTAGTTTTGTATATTCAACCCTTGTTTAAGGTTAAGACCAAGGTTATCGACAACAACTTGAATCCTACTTGGGATCAGACATTTGAATTGATTGCAGAAGACAAGGAGACTCAGTCACTCACTCTTGAGGTTTTTGATGAAGACATTGGGCAGGATAAGCGATTAGGGATAGTACAATTACCCCTTATTGGCCTGGAAGCAGAAACTGAAAAGGACATTGAGTTGAGGCTTCTGTCATCTCTTGATAGACTGAAGGTGAAAGATAAGAAGGACCGAGGAACTTTGACAATAAAGGTCTTTTATCATCAGTTTAACAAGGAAGAGCAGTTGGCTGCACTTGAAGCAGAAAAACTGATATTAGAAGAAAGGAAGAAACTCAAAGCAGCTGGAGTCATAGGAAGCACGATGGACGCGGTAGGGTCCGGTGTTGGACTGGTTGGTACCGGTGTGCTTGCTGGCGCTGGGCTCGTGGGGACCGGCATCGGTGCTGGAGCCGGGCTGGTGGGGAGCGGCATTGGCGCGGGAGCCGGGTTTGTTGGGAGCGGTCTCGGAGCCTTTGGTAGCGGACTGAGCAAGGCGGGGAAGTTCATGGGAAGGACAATCACGGGAAGTCATAGTGCCTCCAGGAGGAGTGGTTCTTCTACTCCAGTCCATAATGCACAGGAGAATGGTGGTGGTGCAAAGCCTCTCTAA 1557 0.456 MGLLSGMFMGILFGIALMAAWERMMRYRSAKRIAKAADIKLLGSLNRDDLKKICGDNLPEWISFPVYEQVKWLNKMLSKLWPFVAEAATLVIRESVEPLLEEYRPPGITSLKFSKLSLGNVAPKIEGIRVQSLTKGQIIMDIDFRWGGDPSIILAVEAAMVASIPIQLKDLKVFTIIRVIFQLAEEIPCISAVVVALLAEPKPRIDYTLKAVGGSLTAIPGISDMIDDTVNTIVTDMLQWPHRIVVPLGGIPVDTSELELKPQGSLKVVVVKANDLKNMEMIGKSDPYVVLYIQPLFKVKTKVIDNNLNPTWDQTFELIAEDKETQSLTLEVFDEDIGQDKRLGIVQLPLIGLEAETEKDIELRLLSSLDRLKVKDKKDRGTLTIKVFYHQFNKEEQLAALEAEKLILEERKKLKAAGVIGSTMDAVGSGVGLVGTGVLAGAGLVGTGIGAGAGLVGSGIGAGAGFVGSGLGAFGSGLSKAGKFMGRTITGSHSASRRSGSSTPVHNAQENGGGAKPL* 519
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g1452 518 Coils Coil 391 411 - -
Lja3g1452 518 MobiDBLite consensus disorder prediction 490 518 - -
Lja3g1452 518 PRINTS C2 domain signature 281 293 IPR000008 -
Lja3g1452 518 PRINTS C2 domain signature 328 336 IPR000008 -
Lja3g1452 518 PRINTS C2 domain signature 306 319 IPR000008 -
Lja3g1452 518 PANTHER EXTENDED SYNAPTOTAGMIN-RELATED 1 513 IPR045050 GO:0008289
Lja3g1452 518 SMART C2_3c 265 362 IPR000008 -
Lja3g1452 518 Pfam C2 domain 264 357 IPR000008 -
Lja3g1452 518 MobiDBLite consensus disorder prediction 490 509 - -
Lja3g1452 518 ProSiteProfiles Synaptotagmin-like mitochondrial lipid-binding proteins (SMP) domain profile. 66 249 IPR031468 GO:0008289
Lja3g1452 518 Gene3D C2 domain 259 415 IPR035892 -
Lja3g1452 518 Pfam Synaptotagmin-like mitochondrial-lipid-binding domain 68 248 IPR039010 -
Lja3g1452 518 CDD C2 266 359 - -
Lja3g1452 518 ProSiteProfiles C2 domain profile. 247 363 IPR000008 -
Lja3g1452 518 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 262 391 IPR035892 -
Lja3g1452 518 PANTHER CALCIUM-DEPENDENT LIPID-BINDING (CALB DOMAIN) FAMILY PROTEIN 1 513 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g1452 Lja-Chr3 15338834 15344988 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g1452 266 363 Lipid Metabolism Gene Families AT4G00700 36.735 5.00e-09 57.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g1452 - - gmx:100798484 770.385
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g1452 3 15338834 15344988 Lja3g1452 3 15338834 15344988 ECH
Lja1g3173 1 38997580 39006832 Lja3g1452 3 15338834 15344988 PCT