Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g3173 ATGGGGTTGTTTTTTGGGATTTTTCTGGGGGTAGTATTCGGCGTAGCATTGATGGCTGGTTGGGAGCGCATGATGAGGTACCGGAGTGCCAAGCGAATTGCAAAGGCGGTTGATGTTAAACTCCTTGGGTCCCTTAACAGAGATGATCTAAAGAAAATTTGTGGTGAAAATTTTCCTGAATGGATATCTTTTCCTGTATATGAGCAGGTGAAATGGCTAAATAAGCTGCTGTCCAAACTATGGCCATTTGTGGCAGATGCAGCAACTTTGGTGATAAGAGAATCTGTTGAACCGTTATTAGAAGAGTACAGACCTCCTGGAATTACTTCATTGAAGTTCAGTAAGCTGTCTCTCGGAACTGTCGCTCCGAAAGTTGAAGGTATTCGTGTTCAGAGTCTTAACAAAGGTCAAATCATAATGGACATTGATTTCCGTTGGGGTGGTGATCCCAATATTGTTTTGGGTGTTGAAGCAGCACTTGTTGCATCAATCCCTATTCAGTTGAAGGATCTCCAGGTTTTCAGCATTATCCGTGTTATATTCCAACTTGCTGAAGAGATCCCCTGCATTTCTGCTGTTGTTGTTGCCCTACTTGCAGAGCCGAAGCCTAGAATTGATTACACTCTGAAGGCTGTTGGTGGGAGTTTGACGGCACTTCCTGGAGTTTCAGATATGATTGATGATACTGTGAACTCAATTGTTACTGATATGCTCCAATGGCCTCATAGGATTGTTGTTCCACTTGGTGGTATTCCTGTTGATACTAGTGAACTGGAGCTTAAACCGCAGGGAAGGCTTACTGTGACTGTGGTGAAAGCAAATGATTTAAAGAATAAGGAAATGATTGGGAAGTCTGATCCTTATGTGGTTGTGTATATTCGCCCACTGTTTAAGGTTAAAACGAAGGTTATTGATAACAACCTCAATCCTATTTGGAATGAGGTCTTTGACTTGATAGCAGAAGACAAGGAGACCCAGTCACTCATTCTTGAGGTTTATGATAAAGACATTGGGCAAGATAAACGATTGGGAATAGCAAAATCACCACTGATTAACCTGGAAGCAGAAACTGAAAAGGAGCTCGAATTGAGGCTGCTGTCATCACTTGATACCCTGAAAGTGAAAGATAAGAAGGATAAAGGAACCTTGACAATAAAGATCCTTTATCATCAATTTGACAAGGAAGAACAGTACGCTGCACTAGAAGCGGAGAAAAGGATACTAGAAGAAAGGAAGAAACTGAAAGAGGAGGGAGTTATTGGAAGCACAATGGATGCACTAGATGGAGCGGCATCAGTAGTCGGGTCTGGTGTTGGAATGGTTGGTACTGGTGTTGCTGCTGGTGCCGGGCTTGTGGGAAGCGGCATTGGTGCTGGAGCCGGGCTTGTTGGCAGCGGCATTGGTGCTGGAGTTGGGATTGTTGGAAGTGGTCTCGGTGCTGTCGGTAGTGGACTGAGCAGGGCTGGTAAGTTCATGGGGAGAACAATCACAGGGCAAGGTGTATCCAGAAGGAGTGGTTCTTCTACTCCTGTCGCTAATTTTGAGGAGAATGATGGTGGTGCGAAGCCACGGTAA 1575 0.4444 MGLFFGIFLGVVFGVALMAGWERMMRYRSAKRIAKAVDVKLLGSLNRDDLKKICGENFPEWISFPVYEQVKWLNKLLSKLWPFVADAATLVIRESVEPLLEEYRPPGITSLKFSKLSLGTVAPKVEGIRVQSLNKGQIIMDIDFRWGGDPNIVLGVEAALVASIPIQLKDLQVFSIIRVIFQLAEEIPCISAVVVALLAEPKPRIDYTLKAVGGSLTALPGVSDMIDDTVNSIVTDMLQWPHRIVVPLGGIPVDTSELELKPQGRLTVTVVKANDLKNKEMIGKSDPYVVVYIRPLFKVKTKVIDNNLNPIWNEVFDLIAEDKETQSLILEVYDKDIGQDKRLGIAKSPLINLEAETEKELELRLLSSLDTLKVKDKKDKGTLTIKILYHQFDKEEQYAALEAEKRILEERKKLKEEGVIGSTMDALDGAASVVGSGVGMVGTGVAAGAGLVGSGIGAGAGLVGSGIGAGVGIVGSGLGAVGSGLSRAGKFMGRTITGQGVSRRSGSSTPVANFEENDGGAKPR* 525
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g3173 524 MobiDBLite consensus disorder prediction 498 514 - -
Lja1g3173 524 PRINTS C2 domain signature 281 293 IPR000008 -
Lja1g3173 524 PRINTS C2 domain signature 306 319 IPR000008 -
Lja1g3173 524 PRINTS C2 domain signature 328 336 IPR000008 -
Lja1g3173 524 ProSiteProfiles Synaptotagmin-like mitochondrial lipid-binding proteins (SMP) domain profile. 66 249 IPR031468 GO:0008289
Lja1g3173 524 PANTHER CALCIUM-DEPENDENT LIPID-BINDING (CALB DOMAIN) FAMILY PROTEIN 1 519 - -
Lja1g3173 524 SMART C2_3c 265 362 IPR000008 -
Lja1g3173 524 Pfam Synaptotagmin-like mitochondrial-lipid-binding domain 68 248 IPR039010 -
Lja1g3173 524 MobiDBLite consensus disorder prediction 496 524 - -
Lja1g3173 524 CDD C2 266 359 - -
Lja1g3173 524 PANTHER EXTENDED SYNAPTOTAGMIN-RELATED 1 519 IPR045050 GO:0008289
Lja1g3173 524 ProSiteProfiles C2 domain profile. 247 363 IPR000008 -
Lja1g3173 524 Pfam C2 domain 264 360 IPR000008 -
Lja1g3173 524 Gene3D C2 domain 259 418 IPR035892 -
Lja1g3173 524 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 262 390 IPR035892 -
Lja1g3173 524 Coils Coil 391 418 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g3173 Lja-Chr1 38997580 39006832 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g3173 266 356 Lipid Metabolism Gene Families AT4G00700 41.758 1.00e-09 59.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g3173 - - mtr:MTR_7g075790 764.222
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g3173 1 38997580 39006832 Lja1g3173 1 38997580 39006832 ECH
Lja1g3173 1 38997580 39006832 Lja3g1452 3 15338834 15344988 PCT