Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g1427 ATGGCTTCCTCGGAAGCCGATTCCCGTCTGAGCCAGGTCCTCGTCCCCGCACTCGAGAAGATCATCAAGAACGCTTCGTGGCGAAAGCACGCGAGGCTCGCTAATGAGTGCAAATCCACCATCGAGAGGCTCAACCGCAGCACGCCGCAGCTTCCTCCCGGTTCTCCGTCCGATACCGAACCGGAAAACTCGGATCCCGGTCCACTCCACGACGGCGGTCCGGTCGAGTACTCGCTTGCCGAGTCCGAGTCGATTCTTAGCCCTCTCATCAATGCCGCTAGCTCCGGCGTTCTGAAGATCGCCGATCCCGCCGTTGATGCCATCCAGAAGCTTATCGCGCATGGATACCTCCGCGGCGAAGCGGATCCCGGTGGCACCGCTGATGAGGCCAAGCTGCTGTCGAATTTGATTGAATCGGTTTGCAAATGCCATGATCTGAGCGACGATGCGATGGAGCTGCTGGTGTTGAAGACGCTGTTATCCGCGGTGACGTCAATTTCGCTGCGAATTCACGGTGATTGCTTGCTTCTGATTGTGAGAACGTGTTATGATATATATCTTGTGAGTAAGAATATGGTGAATCAGACAACGGCGAAGGCGTCGCTGATTCAGATGCTGGTGATTGTGTTTAGAAGAATGGAAGCAGATTCATCCACAGTGCCTATTCAGCCTATTGTGGTGGCTGAATTGATGCAGGCAGCGGAGAAATCTGATGCGGACAGTTCCATGACGCAGTTTGTGCAAGGGTTTATCACGAAGATAATGCAGGACATTGATGGGGTTTTGAACCCCGTGACGCCTAGTGGGAAGGTTTCATTGTTAGGTGGGCATGATGGTGCGTTTGAGACCACCACGGTGGAGACCACGAACCCCACGGATTTACTGGATTCCACTGATAAGGACATGTTGGACGCTAAGTATTGGGAAATCAGTATGTACAAGACGGCATTGGAGGGAAGGAAGGGGGAGCTGGTGGATGGGGAGCTGGTGGAGGAAAGGGATGATGATTTGGAAGTTCAGATTGGGAACAAGCTGAGGAGAGATGCTTTCTTGGTGTTTCGGGCGCTTTGTAAATTGTCTATGAAGACACCCCCTAAGGATGCATCTGCGGATCCGCAGTTGATGAAGGGGAAGATCGTTGCATTAGAGTTGTTGAAGATCTTGCTGGAGAACGCGGGAGGTGTCTTCCGGACTAGTGAAAGGTTTTTAGGTGCCATCAAGCAGTACTTATGTTTGTCATTGTTGAAGAACAGTGCTTCAACTCTTTTGATTGTTTTTCAGCTATCATGCTCCATATTCATCAGTCTGGTATCAAGATTTAGGGCTGGATTGAAAGCAGAAATTGGAGTTTTTTTCCCTATGATTGTTCTCAGGGTCCTAGAAAATGTTTCTCAGCCTAATTTTCAACAAAAGATGATAGTGCTTCGATTTCTGGAGAAGCTTTGTGTTGATTCACAGATTTTGGTTGACATATTTATCAACTACGACTGTGATGTTAATTCATCAAACATATTTGAGAGGATGGTCAATGGACTTCTTAAAACTGCTCAGGGTGTCCCTCCTGGTGTAACGACCACCCTTTTGCCTCCTCAAGAAGCAACACTAAAACTCGAAGCCATGAAAAGCTTGGTTGCTGTCCTAAAATCAATGGGTGACTGGATGAACAAACAACTGCAGATTCCAGATCCTCATTCAGCCAAGAAAGTTGAAGCAACTGATAATGGAACTGAAGCTGGAGGTTTCACCACGGTTAATGGGAATGTAGAAGACCCAGTTGAAGGATCCGATACTCATTCTGAAATCTCTAATGATGCGTCTGATGTTTCATCTATTGAGCAACGCCGAGCTTATAAACTGGAACTTCAGGAAGGTATATCACTATTTAATAGGAAGCCTAAGAAAGGAATTGAGTTCCTCATCAATGCCAAGAAGGTAGGTGATTCTCCGGAGGATATAGCTGCTTTTCTTAAAGATGCGTCTGGGTTAAACAAGACTTTGATTGGTGATTATCTGGGAGAAAGGGAAGAATTATCCTTGAAGGTGATGCATGCATATGTGGATTCCTTTAACTTTGAAGGCATGGAGTTTGATGAGGCAATCAGGGTCTTTCTTCAAGGATTTAGACTGCCTGGTGAGGCACAAAAAATTGATCGGATCATGGAAAAGTTTGCTGAACATTATTACAAATGTAATCCAAAGGTCTTTTCTAGTGCTGACACAGCATATGTCCTTGGTTTTTCTGTGATACTGCTCAATACGGATGCTCACAATCCTATGGTGAAGAACAAGATGTCTGCTGATGATTTCATAAGAAACAATCGTGGAATTGATGATGGAAAAGATCTGCCTGAGGAATACTTGAGGTCATTGTTTGAAAGAATATCCAGAAATGAGATCAAAATGAAAGAAAGTGATATCGCCCCTCAACAAAGACAGGCTGTGAACCCAAATAGAATTTTAGGCTTGGATAGTATATTGAACATTGTGATTCGTAAGCGTGGGGAAGAGAGTCATATGGAAACCAGTGATGATCTTATCCGTCATATGCAAGAACAATTCAAAGAAAAAGCTCGCAAAACTGAGTCAGTCTATTATGCAGCCACAGATGTTGTTATCCTTAGATTCATGATTGAGGTGTGTTGGGCACCAACGTTAGCTGCCTTCAGTGTACCCCTCGATCAAAGTGACGATGAGGTTGTAATATCTCTGTGTCTTGAAGGCTTCCGCCATGCTATTCATGTTACTTCTGTAATGTCCATGAAGACTCATAGAGATGCTTTTGTGACTTCGTTAGCAAAGTTTACCTCACTGCATTCTCCTGCAGATATTAAGCAGAAAAATGTTGAGGCAATTAAGGCAATAGTTGCTATTGCTGATGAGGATGGAAATTACTTACAAGAAGCTTGGGAGCATATCTTGACCTGTGTTTCCCGGTTTGAGCATCTACATCTTCTTGGAGAGGGAGCTCCACCTGATGCTACATTCTTTGCCTTTCCTCAGAATGATTCAGAAACAAAGCAAGCAAAATCAACCATTCTTCCTGTTTTGAAGAAGAAGGGAGCTGGGAGGATGCAGTATGCAGCTGCCACATTAATGCGGGGTTCCTATGATAGTGCTGGAATTGGCGGTAATGTTTCTGGAGCAGTCACATCAGAACAAGTGAACAATCTAGTTTCTAATTTGAATATGTTGGAACAAGTTGGAAGCTCTGAAATGAATCGCATATTCACTCGGAGTCAGAAGTTGAACAGCGAGGCCATAATAGATTTTGTTAAGGCTTTATGCAAGGTGTCCATGGAGGAACTAAGATCTCCATCTGATCCACGGGTTTTCAGCCTCACAAAGATGGTTGAGATTGCGCACTACAATATGAACCGCATCAGGCTTGTATGGTCAAGCATCTGGCATGTTCTCTCTGATTTCTTTGTAACCATTGGCTGTTCTGCGAATCTTTCAATTGCAATTTTTGCAATGGATTCCTTGCGTCAGTTATCAATGAAGTTTCTGGAGCGGGAAGAGTTGGCTAATTATAATTTTCAAAATGAACTTATGAAGCCTTTTGTCATTGTTATGCGAAAGAGTAATGCTGTTGAAATTAGAGAACTAATTATCAGATGTGTCTCTCAAATGGTTCTATCCCGTGTCAACAATGTCAAATCAGGGTGGAAGAGCATGTTCATGGTATTCACGACTGCAGCTTATGATGATCACAAAAACATTGTACTGTTGGCTTTCGAAATTATGGAGAAGATTATTCGAGATTACTTTCCATACATCACTGAGACTGAAACCACCACCTTCACAGACTGTGTGAATTGTCTAATTGCATTCACCAATAGTAGATTCAACAAAGAGATTAGCCTAAATGCAATTGGTTTTCTTCGATTCTGTGCAACAAAACTAGCTGCAGGAGACCTTGGCTCCTCATCCAGGAATAAAGATAAGGAAGTTCCTGGAAAGATTTCCTCACCTTCACCTAGAACAGGAAAAGAAGATAGACAATCTAATGGAGAGATGACTGACAAGGATGATCATCTCCATTTCTGGTTTCCTTTGTTGGCAGGTCTATCTGAGCTTAGCTTTGACCCAAGGCCTGAGATTAGGAAGAGTGCCTTGGAAGTCCTATTTGAAACCTTACGCAACCATGGAAATCTCTTTTCCCTACCTTTATGGGAAAGAGTATTTGAGTCTGTCCTCTTTCCAATATTTGATTATGTCCGACATTCTATTGACCCTTCAGGGGGTAGTTCACCGGTTAATGAAGAAGAGACTGATGGTGAGCTTAATCAGGATGCTTGGGTTTATGAGACCTGCACATTGGCCCTCCAATTGGTTGTAGATATTTTTGTCAACTTTTACAGCACTGTCAATCCACTTTTAAAAAAGGTGCTGATACTCCTGGTAAGCTTTATAAAGCGTCCTCATCAAAACCTTGCTGGCATTGGTATTGCTGCATTTGTTCGTTTGATGAGTAATGCTGGGGAGCTATTTTCTGATGTAAAGTGGTTAGAAGTGGTTTTATCTCTAAAAGAAGCAGCAAATGCAACACTCCCCAACTTTTCATTCCTCGAGAGTGAAGACTTTGTGGCTAGTAATCATGAACATGCTTCAACAACAGCCGGAGATGATACCGATCTTGCCGAGTCTGGTTTGCTAGATAATTCAGAAAGCCTAAGAAATCAGCATATTTATGTTTATATCATTGATGCAAAAAGCCGAGCAGGTGTTCAGCTGTTACTGATTCAGGCGGTGATGGAGATCTATAACATGTTTCGGTCCCACCTTTCATCAAAAACCATGCTAGTCTTGTTTGACGCTTTGCACAATGTAGCATTACATGCGCACAAGATTAACAGCAATAGCATTTTGCGTTCTAAGCTTCAAGAGTTTGGTTCTATGACCCAAATGCAAGACCCTCCACTGTTACGCCTTGAAAATGAATCATACCAAATATGCCTTACATTTTTACAGAACCTTGTTGTCGACAAGCCTCCTACTTATGAAGCAGCTGTGGTTGAATCTCATCTTGTTCGATTTTGTCAAGAGGTTTTGGAGTTTTACATTGAAGTTGCAGGCTTTGGACAAAAATCTGAATCTTCTAATGGTAGAAAGCCACATTGGTCAATTCCTTTAGGCTCTGGGAAGAGGAGAGAATTAGCTGCACGTTCACCTCTTGTTGTGGCTACTCTGCAGGCTATTTGTAGTTTGGGAGATATTTCTTTTGAGAAGAACCTGTCTCATTTTTTCCCTCTTCTCTCTAGCCTGGTAAGTTGTGAACATGGTTCAAACGATGTCCAAGTTGCTCTCAGTGATATGCTTAGTTTATCAGTTGGTTCTGTTTTGCTTCAGTCATGTTGA 5358 0.4323 MASSEADSRLSQVLVPALEKIIKNASWRKHARLANECKSTIERLNRSTPQLPPGSPSDTEPENSDPGPLHDGGPVEYSLAESESILSPLINAASSGVLKIADPAVDAIQKLIAHGYLRGEADPGGTADEAKLLSNLIESVCKCHDLSDDAMELLVLKTLLSAVTSISLRIHGDCLLLIVRTCYDIYLVSKNMVNQTTAKASLIQMLVIVFRRMEADSSTVPIQPIVVAELMQAAEKSDADSSMTQFVQGFITKIMQDIDGVLNPVTPSGKVSLLGGHDGAFETTTVETTNPTDLLDSTDKDMLDAKYWEISMYKTALEGRKGELVDGELVEERDDDLEVQIGNKLRRDAFLVFRALCKLSMKTPPKDASADPQLMKGKIVALELLKILLENAGGVFRTSERFLGAIKQYLCLSLLKNSASTLLIVFQLSCSIFISLVSRFRAGLKAEIGVFFPMIVLRVLENVSQPNFQQKMIVLRFLEKLCVDSQILVDIFINYDCDVNSSNIFERMVNGLLKTAQGVPPGVTTTLLPPQEATLKLEAMKSLVAVLKSMGDWMNKQLQIPDPHSAKKVEATDNGTEAGGFTTVNGNVEDPVEGSDTHSEISNDASDVSSIEQRRAYKLELQEGISLFNRKPKKGIEFLINAKKVGDSPEDIAAFLKDASGLNKTLIGDYLGEREELSLKVMHAYVDSFNFEGMEFDEAIRVFLQGFRLPGEAQKIDRIMEKFAEHYYKCNPKVFSSADTAYVLGFSVILLNTDAHNPMVKNKMSADDFIRNNRGIDDGKDLPEEYLRSLFERISRNEIKMKESDIAPQQRQAVNPNRILGLDSILNIVIRKRGEESHMETSDDLIRHMQEQFKEKARKTESVYYAATDVVILRFMIEVCWAPTLAAFSVPLDQSDDEVVISLCLEGFRHAIHVTSVMSMKTHRDAFVTSLAKFTSLHSPADIKQKNVEAIKAIVAIADEDGNYLQEAWEHILTCVSRFEHLHLLGEGAPPDATFFAFPQNDSETKQAKSTILPVLKKKGAGRMQYAAATLMRGSYDSAGIGGNVSGAVTSEQVNNLVSNLNMLEQVGSSEMNRIFTRSQKLNSEAIIDFVKALCKVSMEELRSPSDPRVFSLTKMVEIAHYNMNRIRLVWSSIWHVLSDFFVTIGCSANLSIAIFAMDSLRQLSMKFLEREELANYNFQNELMKPFVIVMRKSNAVEIRELIIRCVSQMVLSRVNNVKSGWKSMFMVFTTAAYDDHKNIVLLAFEIMEKIIRDYFPYITETETTTFTDCVNCLIAFTNSRFNKEISLNAIGFLRFCATKLAAGDLGSSSRNKDKEVPGKISSPSPRTGKEDRQSNGEMTDKDDHLHFWFPLLAGLSELSFDPRPEIRKSALEVLFETLRNHGNLFSLPLWERVFESVLFPIFDYVRHSIDPSGGSSPVNEEETDGELNQDAWVYETCTLALQLVVDIFVNFYSTVNPLLKKVLILLVSFIKRPHQNLAGIGIAAFVRLMSNAGELFSDVKWLEVVLSLKEAANATLPNFSFLESEDFVASNHEHASTTAGDDTDLAESGLLDNSESLRNQHIYVYIIDAKSRAGVQLLLIQAVMEIYNMFRSHLSSKTMLVLFDALHNVALHAHKINSNSILRSKLQEFGSMTQMQDPPLLRLENESYQICLTFLQNLVVDKPPTYEAAVVESHLVRFCQEVLEFYIEVAGFGQKSESSNGRKPHWSIPLGSGKRRELAARSPLVVATLQAICSLGDISFEKNLSHFFPLLSSLVSCEHGSNDVQVALSDMLSLSVGSVLLQSC* 1786
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g1427 1785 Gene3D - 610 691 - -
Lja3g1427 1785 Pfam Guanine nucleotide exchange factor in Golgi transport N-terminal 346 504 IPR032691 -
Lja3g1427 1785 PANTHER GUANYL-NUCLEOTIDE EXCHANGE FACTOR 9 1778 - -
Lja3g1427 1785 MobiDBLite consensus disorder prediction 38 75 - -
Lja3g1427 1785 Pfam Dimerisation and cyclophilin-binding domain of Mon2 6 216 IPR032629 -
Lja3g1427 1785 CDD Sec7 617 799 IPR000904 GO:0005085|GO:0032012
Lja3g1427 1785 MobiDBLite consensus disorder prediction 576 607 - -
Lja3g1427 1785 MobiDBLite consensus disorder prediction 564 607 - -
Lja3g1427 1785 Pfam C-terminal region of Mon2 protein 1347 1409 IPR032817 -
Lja3g1427 1785 Pfam Sec7 domain 618 799 IPR000904 GO:0005085|GO:0032012
Lja3g1427 1785 PANTHER SEC7 DOMAIN-CONTAINING PROTEIN-RELATED 9 1778 - -
Lja3g1427 1785 Gene3D - 692 810 IPR023394 -
Lja3g1427 1785 Pfam Domain of unknown function (DUF1981) 1167 1249 IPR015403 -
Lja3g1427 1785 Pfam BIG2 C-terminal domain 1576 1774 IPR046455 -
Lja3g1427 1785 MobiDBLite consensus disorder prediction 40 62 - -
Lja3g1427 1785 SUPERFAMILY Sec7 domain 614 805 IPR035999 GO:0005085|GO:0032012
Lja3g1427 1785 SUPERFAMILY ARM repeat 1348 1769 IPR016024 -
Lja3g1427 1785 SUPERFAMILY ARM repeat 403 1409 IPR016024 -
Lja3g1427 1785 SMART sec7_5 614 799 IPR000904 GO:0005085|GO:0032012
Lja3g1427 1785 MobiDBLite consensus disorder prediction 1306 1339 - -
Lja3g1427 1785 ProSiteProfiles SEC7 domain profile. 610 797 IPR000904 GO:0005085|GO:0032012
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g1427 Lja-Chr3 15086752 15097790 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g1427 K18442 - gmx:100798955 3088.13
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g3187 1 39340010 39354207 Lja3g1427 3 15086752 15097790 PCT