Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g3187 ATGGCTTCTTCGGAAGCCGATTCCCGGCTCAGCCAGGTCCTGGTCCCCGCGCTCGAGAAGATCATCAAGAACGCCTCGTGGCGGAAGCACGCCAAGCTCGCTCACGAGTGTAAATCCGTCATCGAAACCCTAACCTCGCCGCAGAAGGAGCTCCAATCGCCGCCTTCCGATGATGCCGCCGCCGGAGAGCCTGAGGCCTCCGTCCCTGGCCCGCTCCACGCTGGAGATACTGTTGAGTACTCTCTGGCTGAGTCCGAATCGATCCTCTCCCCTCTCATCAACGCCGCCGGCTCCGGCGTCTTGAAGATCGCCGATCCCGCCGTCGACGCTGTCCAGAAGCTCATCGCTCTCGGCTACCTCCGCGGCGAAGCGGATGCCGCCGGTGGCTTGCCGGAGGCGAAGCTTCTAGCGAGCCTGATTGAATCAGTGTGCAAGTGCCACGACCTGGGCGACGACGCCATTGAACTCCTCGTGCTGAAGACGCTACTTTCGGCGGTAACTTCGATTTCGCTGAGAATTCACGGTGATTGCTTGCTCTTGATTGTGAGGACTTGTTATGATATTTATCTTGGTAGCAAGAATGTGGTGAATCAAACGACGGCAAAAGCGTCGTTGATTCAGATGTTAGTGATTGTGTTCAGGAGGATGGAGGCTGATTCATCCACGGTTCCGATTCAGCCCATTGTGGTGGCTGAATTGATGGAACCTGTGGAAAAATCTGATGTAGATAGCTCCACACAGTTTGTACAGGGTTTTATCACAAAAATTATGCAAGACATTGATGGGGTTTTCAACTCAGCTACAACGCCGAGTAAGTTGTCCGCGTTGAGTGGCCATGATGGCGCGTTTCAGACCACCGCCACGGTGGAGACAACGAATCCAGCGGATTTGTTGGATTCCACTGATAAGGATATGTTGGATGCTAAGTATTGGGAGATCAGTATGTATAAGACAGCTTTGGAGGGGAGGAAAGGGGAGCTGGTGGATGGGGAACTGGTAGAGAGGGATGATGATTTGGAGATTCAGATTGGAAATAAGCTGAGGAGAGATGCTTTTTTGGTATTCAGGGCACTTTGTAAATTGTCCATGAAGACACCGCCTAAGGAGGCCTCTGCTGATCCCCAGTTGATGAAGGGGAAGATTGTGGCTCTGGAGTTGCTGAAGATTTTACTGGAGAATGCTGGAGCTGTCTTCAGGACCAGTGAGAGGTTCTTGGGTGCCATCAAGCAGTACTTGTGCTTATCATTGTTGAAGAATAGTGCTTCAACTCTTATAATTGTATTTCAGCTATCATGCTCCATCTTCATCAGTCTGGTATCAAGATTTAGAGCTGGATTGAAAGCAGAAATTGGAGTTTTTTTCCCAATGATTGTTCTCAGGGTTCTAGAAAATGTTGCGCAACCTAATTTTCAGCAAAAGATGATAGTGCTTCGTTTTCTAGAGAAACTTTGTGCTGATTCACAGATATTGGTAGACATTTTTATAAATTATGACTGTGATGTCAATTCATCAAACATATTTGAGAGGATGGTCAATGGACTTCTCAAAACCGCCCAAGGTGTCCCTCCTGGTGTGACAACCACACTTTTGCCACCTCAAGAGGCAACTCTAAAACTGGAAGCCATGAAATGCTTGGTTGCTGTTTTAAAATCGATGGGAGACTGGATGAACAGACAATTGCGCATTCCAGACCCTCATTCAGGGAAGAAAGTAGAAGCAGTTGATAATGGCCATGAAGTTGGAGGTCTTCCCGTGGTAAATGGGAATGGAGAAGAGTCAGTTGAAGGATCGGAAACTCATTCTGAAATCTCCAATGAAGCATCTGATGTTTCATCTATTGAACAACGCCGGGCTTATAAACTAGAACTTCAGGAAGGTATATCACTTTTCAATAGAAAGCCAAAGAAAGGAATTGACTTCCTCATCAAAGCCAACAAAGTGGGTAATTCACCAGAGGATATAGCTGCTTTTCTTAAAGATGCATCTGGGTTGGACAAGACTTTAATTGGTGATTATCTGGGAGAAAGGGAAGAATTATCCTTGAAGGTAATGCATGCCTATGTGGACTCTTTTGAATTTCAAGGGATTGAATTTGATGAGGCTATCAGGACCTTTCTCCAAGGCTTTAGACTGCCTGGTGAGGCGCAGAAAATTGATCGAATCATGGAAAAATTTGCTGAACGTTATTGCAAATGCAATCCAAAAGTCTTTTCTAGTGCTGATACAGCATATGTTCTTGCCTATTCTGTAATAATGCTGAATACTGATGCTCACAATCCTATGGTGAAGAATAAGATGTCTGTTGATGATTTCATAAAAAACAATCGTGGCATAGATGATGGAAAAGATATGCCAGAGGAATACCTGAAGTCATTGTTTGAGAGAATATCTAGAAATGAGATCAAAATGAAAGATGTTAATCTGGAACCCCAACAAAGACAGGCTGTGAACCCTAACAGGATCTTAGGCTTGGATAGTATATTGAATATTGTGATTCGTAAGCGTGGCGAAGACGGTCATATGGAAACCAGTGATGATCTAATCCGGCGTATGCAAGAACAATTCAAAGAAAAAGCTCGCAAAACAGAGTCAGTCTATTATGCAGCAACTGATGTTGTAATCCTTAGATTCATGATTGAGGTGTGTTGGGCACCAATGTTAGCTGCTTTCAGCGTTCCTCTAGACCAAAGTGATGATGAAGTTGTAATAGCTCTGTGTCTTGAAGGCTTCCGCTATGCTATTCATGTTACTTCTGTAATGTCCATGAAGACACATAGAGATGCCTTTTTGACTTCATTAGCAAAGTTTACCTCCCTCCACTCTCCTGCTGATATCAAGCAGAAAAATGTAGATGCAATCAAGGCAATAGTTACTATTGCTGATGAGGATGGGAATTACTTACAAGAAGCTTGGGAGCATATCTTGACTTGTGTTTCCCGATTTGAGCATCTACATCTTCTCGGAGAGGGGGCTCCACCAGATGCCACGTTTTTTGCTTTTCCTCAGAATGATTCTGAAAAAGCAAAGCAAACAAAATCAACTATTCTTCCAGTTCTGAAGAAGAAAGGACCTGCAAGGATGCAGTATGCCGCTGCCACGGTGATGCGTGGTACATATGATAGTAGCGGAATTGGCAGTAATGCTTCTGGAGCCGTCACCTCAGAACAGGTGAACAATCTGGTCTCTAATTTGAATATGTTGGAACAAGTTGGAAGCTCAGAAATGAATCGCATATTCACTCGGAGTCAGAAGTTGAACAGCGAGGCCATAATAGATTTTGTTAAGGCTTTATGCAAGGTCTCCATGGAAGAATTGAGATCTCCATCCGATCCACGGGTGTTCAGCCTTACGAAGATAGTTGAGATTGCGCACTATAATATGAACCGTATCAGGCTTGTGTGGTCAAGCATCTGGCATGTTCTTTCAGATTTCTTTGTAACCATTGGTTGTTCAGGAAACCTTTCAATCGCAATTTTCGCAATGGATTCCTTGCGTCAGTTGTCAATGAAATTTCTTGAGCGGGAAGAGTTGGCTAATTATAATTTTCAAAATGAATTTATGAAGCCTTTCGTCATTGTTATGCGAAAGAGTAGTGCTGTAGAAATTAGAGAACTTATTATCAGATGTGTCTCTCAAATGGTCTTATCTCGTGTCAACAATGTCAAGTCAGGATGGAAGAGCATGTTCATGGTATTCACAACAGCAGCATATGATGAGCACAAAAACATTGTACTCTTGGCTTTTGAGATTATTGAGAAGATTATTCGAGATTACTTTCCACACATCACTGAGACTGAAACAACTACCTTTACAGATTGTGTGAATTGTCTAATTGCATTCACCAATAGTAGATTTAACAAAGAGATTAGCCTAAATGCCATTGCTTTCCTTCGATTTTGTGCAACAAAACTGGCAGAAGGAGACCTTGGCTCTTCATCAAGGAATAAGGACAAGGAAACTTCTGGAAAGATTTCTGCACCTTCACCTCGAACAGGAAAAGAGGGGAAACAAGATAATGGAGAAGTGTCAGACAAGGATGATCATCTCTATTTCTGGTTTCCTTTGTTGGCTGGTTTGTCTGAGCTAAGCTTTGACCCAAGGTCTGAGATAAGGCAGAGCGCTTTGCAAGTCCTATTTGAAACCTTACGCAACCATGGCCACCTCTTTTCACTGCCTTTATGGGAACGAGTTTTTGAATCAGTCTTATTTCCAATATTTGATTATGTTCGTCATGCTATTGATCCTTCAGGGAGTAGCTCCCCGGTCAATGAAGTAGAAACTGATGGTGAGCTTGACCAAGATGCATGGCTTTACGAGACATGCACATTAGCTCTCCAATTAGTGGTTGATCTTTTTGTCAACTTCTATAATACTGTTAATCCACTTTTAAGAAAGGTGTTGATGCTCCTTGTAAGCTTTATAAAGCGCCCTCATCAAAGTCTGGCTGGCATTGGTATTGCTGCATTTGTTCGATTGATGAGTAATGCTGGGGAGCTGTTTTCTGATGAAAAGTGGTTAGAAGTGGTTTTGTCACTAAAAGATGCAGCGAATGCAACACTCCCTAACTTTTCATTCCTTGACAGTGGAGACTTTGTGACTAGAAATCATGAACAGACTTCAACAGATGAAGATGAGAATGATCCTGCTAAGTCTGACTCACCTGATAATTTAGAAAGCCTGAGGAATCGTCATCTTTTTGCATTTTTATCTGATGCAAAATGCCGAGCTGCTGTCCAGCTTTTATTGATTCAGGCGGTGACGGAGATCTACAACATGTACCGTTTTCAACTTTCAGCAAAAGCCATGCTAGTCCTGTTTGATGCTTTGCATGATGTGGCATTACATGCTCACAAGATTAACAGCAATACTATTTTACGTTTCAAGTTACAAGAGTTTGGCTCCATGACCCAAATGCAAGACCCTCCATTGTTGCGCCTTGAGAATGAGTCCTACCAAATATGCCTCACATTTTTACAGAACCTCATTGTGGATAAACCTCCTTGTTTTGAGGAGGCTGAGGTTGAGACTCAACTAGTTCGTCTTTGTCACGAGGTATTGGAGTTTTACATTGAAGTTGCAGGTTTTCGACAAGCATCTGAATCTTCTCTTGGTAGACGCCAACATTGGTTTATTCCTCTAGGCTCTGGGAAGCGGAGAGAATTGGCTGCGCGTGCACCACTTGTTGTGGCTACTCTCCAGGCTATTAATCATTTGGGAGAAATTTCTTTTGAGAAGAACCTGCCACATCTTTTCCCTCTCCTCTCAAGCTTGATAAGTTGTGAACATGGGTCAACTGAGGTCCAGGTAGCTCTCAGTGATATGCTAAGTTTATCAGTTGGTCCTCTTTTGCTACGGTCATGTTAA 5364 0.4349 MASSEADSRLSQVLVPALEKIIKNASWRKHAKLAHECKSVIETLTSPQKELQSPPSDDAAAGEPEASVPGPLHAGDTVEYSLAESESILSPLINAAGSGVLKIADPAVDAVQKLIALGYLRGEADAAGGLPEAKLLASLIESVCKCHDLGDDAIELLVLKTLLSAVTSISLRIHGDCLLLIVRTCYDIYLGSKNVVNQTTAKASLIQMLVIVFRRMEADSSTVPIQPIVVAELMEPVEKSDVDSSTQFVQGFITKIMQDIDGVFNSATTPSKLSALSGHDGAFQTTATVETTNPADLLDSTDKDMLDAKYWEISMYKTALEGRKGELVDGELVERDDDLEIQIGNKLRRDAFLVFRALCKLSMKTPPKEASADPQLMKGKIVALELLKILLENAGAVFRTSERFLGAIKQYLCLSLLKNSASTLIIVFQLSCSIFISLVSRFRAGLKAEIGVFFPMIVLRVLENVAQPNFQQKMIVLRFLEKLCADSQILVDIFINYDCDVNSSNIFERMVNGLLKTAQGVPPGVTTTLLPPQEATLKLEAMKCLVAVLKSMGDWMNRQLRIPDPHSGKKVEAVDNGHEVGGLPVVNGNGEESVEGSETHSEISNEASDVSSIEQRRAYKLELQEGISLFNRKPKKGIDFLIKANKVGNSPEDIAAFLKDASGLDKTLIGDYLGEREELSLKVMHAYVDSFEFQGIEFDEAIRTFLQGFRLPGEAQKIDRIMEKFAERYCKCNPKVFSSADTAYVLAYSVIMLNTDAHNPMVKNKMSVDDFIKNNRGIDDGKDMPEEYLKSLFERISRNEIKMKDVNLEPQQRQAVNPNRILGLDSILNIVIRKRGEDGHMETSDDLIRRMQEQFKEKARKTESVYYAATDVVILRFMIEVCWAPMLAAFSVPLDQSDDEVVIALCLEGFRYAIHVTSVMSMKTHRDAFLTSLAKFTSLHSPADIKQKNVDAIKAIVTIADEDGNYLQEAWEHILTCVSRFEHLHLLGEGAPPDATFFAFPQNDSEKAKQTKSTILPVLKKKGPARMQYAAATVMRGTYDSSGIGSNASGAVTSEQVNNLVSNLNMLEQVGSSEMNRIFTRSQKLNSEAIIDFVKALCKVSMEELRSPSDPRVFSLTKIVEIAHYNMNRIRLVWSSIWHVLSDFFVTIGCSGNLSIAIFAMDSLRQLSMKFLEREELANYNFQNEFMKPFVIVMRKSSAVEIRELIIRCVSQMVLSRVNNVKSGWKSMFMVFTTAAYDEHKNIVLLAFEIIEKIIRDYFPHITETETTTFTDCVNCLIAFTNSRFNKEISLNAIAFLRFCATKLAEGDLGSSSRNKDKETSGKISAPSPRTGKEGKQDNGEVSDKDDHLYFWFPLLAGLSELSFDPRSEIRQSALQVLFETLRNHGHLFSLPLWERVFESVLFPIFDYVRHAIDPSGSSSPVNEVETDGELDQDAWLYETCTLALQLVVDLFVNFYNTVNPLLRKVLMLLVSFIKRPHQSLAGIGIAAFVRLMSNAGELFSDEKWLEVVLSLKDAANATLPNFSFLDSGDFVTRNHEQTSTDEDENDPAKSDSPDNLESLRNRHLFAFLSDAKCRAAVQLLLIQAVTEIYNMYRFQLSAKAMLVLFDALHDVALHAHKINSNTILRFKLQEFGSMTQMQDPPLLRLENESYQICLTFLQNLIVDKPPCFEEAEVETQLVRLCHEVLEFYIEVAGFRQASESSLGRRQHWFIPLGSGKRRELAARAPLVVATLQAINHLGEISFEKNLPHLFPLLSSLISCEHGSTEVQVALSDMLSLSVGPLLLRSC* 1788
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g3187 1787 MobiDBLite consensus disorder prediction 1308 1342 - -
Lja1g3187 1787 Pfam Dimerisation and cyclophilin-binding domain of Mon2 6 219 IPR032629 -
Lja1g3187 1787 SUPERFAMILY ARM repeat 383 1511 IPR016024 -
Lja1g3187 1787 PANTHER GUANYL-NUCLEOTIDE EXCHANGE FACTOR 9 1780 - -
Lja1g3187 1787 Pfam Guanine nucleotide exchange factor in Golgi transport N-terminal 348 506 IPR032691 -
Lja1g3187 1787 ProSiteProfiles SEC7 domain profile. 612 799 IPR000904 GO:0005085|GO:0032012
Lja1g3187 1787 SMART sec7_5 616 801 IPR000904 GO:0005085|GO:0032012
Lja1g3187 1787 Pfam Sec7 domain 620 801 IPR000904 GO:0005085|GO:0032012
Lja1g3187 1787 Pfam C-terminal region of Mon2 protein 1351 1412 IPR032817 -
Lja1g3187 1787 Gene3D - 599 692 - -
Lja1g3187 1787 Pfam Domain of unknown function (DUF1981) 1170 1252 IPR015403 -
Lja1g3187 1787 Gene3D - 693 812 IPR023394 -
Lja1g3187 1787 SUPERFAMILY Sec7 domain 616 807 IPR035999 GO:0005085|GO:0032012
Lja1g3187 1787 PANTHER SEC7 DOMAIN-CONTAINING PROTEIN-RELATED 9 1780 - -
Lja1g3187 1787 MobiDBLite consensus disorder prediction 581 609 - -
Lja1g3187 1787 CDD Sec7 619 801 IPR000904 GO:0005085|GO:0032012
Lja1g3187 1787 MobiDBLite consensus disorder prediction 1536 1556 - -
Lja1g3187 1787 MobiDBLite consensus disorder prediction 45 73 - -
Lja1g3187 1787 Pfam BIG2 C-terminal domain 1578 1776 IPR046455 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g3187 Lja-Chr1 39340010 39354207 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g3187 K18442 - gmx:100789988 3124.72
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g3187 1 39340010 39354207 Lja1g3187 1 39340010 39354207 ECH
Lja1g3187 1 39340010 39354207 Lja3g1427 3 15086752 15097790 PCT