Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g1087 ATGGGTTCTCCTAAGCAAAAAGATGTAGATCATGGTCAACCACCTTTGCTAGAGCTTAATGACCACCCACCACCACCATTGCCGCTGTCGTTTGCTGATTCATTCAGCGTGAAGCATGAAGGATCAGACGGTGAGCTTGAGCGAATACTCTCAGACACGAGCGTCCCTTTTGCAAAGCGTTATGGATCTGCAACATGGATTGAGCTCAAGCTCTTGATTTACCTTGCTGCTCCTGCTGTCATAGTGTACCTCATCAACTATGTCATGTCCATGTCCACTCAAATCTATTCAGGCCACTTGGGAAACCTTGAGCTAGCTGCGGCTTCCCTTGGAAACAATGGTATCCAAGTCTTCGCTTATGGCCTCATGTTGGGCATGGGGAGTGCTGTTGAAACACTATGCGGACAAGCATACGGTGCAAGAAAGTTCGAGATGCTAGGCATATACATGCAAAGATCAATCATTCTTCTCTCACTAGCCGGAGTCGTTTTAACAATAATCTACATCTTCTGTGAGCCCATCTTGATCTTCTTAGGAGAATCCCCAAGAATCGCAAAAGCAGCAACACTCTTCGTCTATGGCCTCATCCCTCAAATCTTCGCCTACAGCTTAAACTTCCCTATCCAGAAATTCTTACAAGCACAGAGCATAGTTGCTCCAAGTGCATACATCTCATCAGCGACGTTGGTCCTGCATCTCGTCCTAAGCTACGTCGTGGTCTACGTGCTCAAGCTCGGGTTGTTGGGCGCGTCTCTAATGTTGAGCGCGTCATGGTGGATCGTAGTGATTGGGCAGTTTGTGTACATTGTGAAGAGTGAGAGGTGCAGACACACATGGAAAGGGTTCACGTTCTTCAAGCTATCTGCGGCATCTGCAGTTATGTTATGCCTCGAGACGTGGTACTTTCAGATCCTGGTTTTGCTTGCTGGGTTGCTTCCTCATCCAGAGTTAGCTTTGGATTCACTTTCTATTTGTACCACATTGTCTGGATACGTGTTCATGATTTCAGTTGGATTCAATGCAGCTGCGAGTGTGAGAGTGAGCAATGAGCTGGGGTCAAGAAATCCAAAATCAGCCTCATTTTCAGTGGTGGTGGTGACAACGCTTTCTTTCATAATATCAGTTATTGAAGCACTTGCGGTGCTTGTGTTGCGAGATGTGATCAGCTATGTCTTCACGGACGGTGAAGAGGTTGCGGCTGCTGTCTCAGACCTCTGTCCTCTCCTCGCTCTAGCCATTGTCCTCAACGGCATTCAACCTGTCTTATCCGGTGTGGCCGTTGGATGTGGATGGCAAACTTTTGTTGCGTATGTGAACGTTGGTTGTTATTATGGAATTGGCATACCATTTGGTGAGTTCTTGGTTTCTACTTCAAATTTGGGAATATGGTTGGGAATGCTGGCTGGCACGGTTTTGCAAACAATTATTTTAATGTGGGTCACATTTCGAACAGATTGGAATAAAGAGGTTGAAGAGGCAACGAAGAGGTTGAATAAATGGGAGGAATCGACTACAGAGCCACTTCTCAAGAATACAACATCTCCAAATGTGGAATAA 1557 0.4618 MGSPKQKDVDHGQPPLLELNDHPPPPLPLSFADSFSVKHEGSDGELERILSDTSVPFAKRYGSATWIELKLLIYLAAPAVIVYLINYVMSMSTQIYSGHLGNLELAAASLGNNGIQVFAYGLMLGMGSAVETLCGQAYGARKFEMLGIYMQRSIILLSLAGVVLTIIYIFCEPILIFLGESPRIAKAATLFVYGLIPQIFAYSLNFPIQKFLQAQSIVAPSAYISSATLVLHLVLSYVVVYVLKLGLLGASLMLSASWWIVVIGQFVYIVKSERCRHTWKGFTFFKLSAASAVMLCLETWYFQILVLLAGLLPHPELALDSLSICTTLSGYVFMISVGFNAAASVRVSNELGSRNPKSASFSVVVVTTLSFIISVIEALAVLVLRDVISYVFTDGEEVAAAVSDLCPLLALAIVLNGIQPVLSGVAVGCGWQTFVAYVNVGCYYGIGIPFGEFLVSTSNLGIWLGMLAGTVLQTIILMWVTFRTDWNKEVEEATKRLNKWEESTTEPLLKNTTSPNVE* 519
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g1087 518 MobiDBLite consensus disorder prediction 1 24 - -
Lja3g1087 518 CDD MATE_eukaryotic 68 492 IPR045069 GO:0042910|GO:1990961
Lja3g1087 518 Pfam MatE 291 451 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Lja3g1087 518 Pfam MatE 78 238 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Lja3g1087 518 PANTHER MULTIDRUG RESISTANCE PROTEIN 22 497 - -
Lja3g1087 518 PANTHER PROTEIN DETOXIFICATION 22 497 - -
Lja3g1087 518 TIGRFAM matE: MATE efflux family protein 78 463 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Lja3g1087 518 Coils Coil 483 503 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g1087 Lja-Chr3 11291053 11297478 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g1087 K03327 - gmx:100801718 768.459
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g1087 3 11291053 11297478 Lja3g1087 3 11291053 11297478 ECH
Lja3g3491 3 68879946 68886715 Lja3g1087 3 11291053 11297478 PCT