Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g0948 ATGCAGACACTCACTCCACCACCGCACTCCAATTCTCTTAACTACCTGAACCGGGCGCGTCCCTCTTTTACTCGGGTCACTCCGAACCGGTTTATGGTTAAATGCGGGTACGGGTTTGAACCCGCGAGTTACGCTCAAGGAATCGGCTCGAGCCGAGCCGATTGGCAAAGCTCGTGCGCCATCTTAGCCAGCAAGGTCGTTTCACAGGAAGAAACTCCGGCCGCCGCTGGCAACGACCACGTCGGCGCCGTCAACGGTCACAACCCTGCCATGGCGGATCTGAAACTCGTCCCTATCGGTAAAAAAACCGACGGCGCCAACACGAAGCTCATCCGGTCGCCGCTGACAATCTCCGACCTATCTCCGGCGCCGCTGCATGGGTCCCAGCTGCGCGTGGCGTACCAGGGAGTCCCCGGTGCGTACTCCGAGGCGGCCGCCGGAAAAGCCTATCCAAACAGCGACGCGATCCCGTGCGACCAGTTCGAGGTAGCGTTCCAATCGGTGGAGCTCTGGATCGCCGATCGCGCAGTTCTTCCAGTGGAGAATTCCCTCGGCGGATCGATCCACCGGAACTACGACCTCCTCCTCCGCCACCGCCTCCACATCGTCGGCGAGGTCCAGCTTCCAGTCCACCACTGCCTCCTCGCCCTCCCTGGAGTCCGGAAGGAGTATCTCACGCGCGTGATCTCGCATCCTCAGGCACTCGCGCAGTGCGAGCACACGCTAACAAAACTCGGCCTCAACGTGGCGCGTGAGGCCGTCGACGACACCGCCGGCGCAGCCGAGTTTATCGCCGCCAACAACCTCCGTGACACTGCCGCAGTCGCGAGTGCACGCGCCGCAGAACTCTACGGCCTCCAGGTCCTCGCCGATGGGATCCAAGATGACCCGAATAACGTGACCCGGTTCGTGATGTTGGCCCGAGAACCCATTATCCCGAGAACGGATCGTCCGTTCAAGACGAGCATCGTGTTCGCGCATGATAAGGGAACTTCGGTGCTATTCAAAGTGTTATCTGCTTTTGCGTTTAGGAACATAAGTTTGACCAAGATTGAGTCAAGGCCTCATCGTAGCCGTCCGATTAGGGTGGTTGATGGTGAGAGTGAGGGTACAGCGAAACACTTTGAGTACTTGTTCTATATTGATTTTGATGCCTCTTTGGCTGAGGTTAGGGCCCAAAATGCACTTGCTGAGGTTCAAGAGTTCACTTCTTTCTTGAGAGTGTTGGGGAGTTACCCTATGGATATGACACCTTGGAGCCCTTCTTGTTCTTCTCACCGGGGAGATCATTAG 1293 0.577 MQTLTPPPHSNSLNYLNRARPSFTRVTPNRFMVKCGYGFEPASYAQGIGSSRADWQSSCAILASKVVSQEETPAAAGNDHVGAVNGHNPAMADLKLVPIGKKTDGANTKLIRSPLTISDLSPAPLHGSQLRVAYQGVPGAYSEAAAGKAYPNSDAIPCDQFEVAFQSVELWIADRAVLPVENSLGGSIHRNYDLLLRHRLHIVGEVQLPVHHCLLALPGVRKEYLTRVISHPQALAQCEHTLTKLGLNVAREAVDDTAGAAEFIAANNLRDTAAVASARAAELYGLQVLADGIQDDPNNVTRFVMLAREPIIPRTDRPFKTSIVFAHDKGTSVLFKVLSAFAFRNISLTKIESRPHRSRPIRVVDGESEGTAKHFEYLFYIDFDASLAEVRAQNALAEVQEFTSFLRVLGSYPMDMTPWSPSCSSHRGDH* 431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g0948 430 ProSitePatterns Prephenate dehydratase signature 1. 284 306 IPR018528 GO:0004664|GO:0009094
Lja3g0948 430 ProSiteProfiles ACT domain profile. 322 413 IPR002912 -
Lja3g0948 430 ProSiteProfiles Prephenate dehydratase domain profile. 131 308 IPR001086 GO:0004664|GO:0009094
Lja3g0948 430 ProSitePatterns Prephenate dehydratase signature 2. 348 355 IPR018528 GO:0004664|GO:0009094
Lja3g0948 430 PANTHER PREPHENATE DEHYDRATASE P PROTEIN 11 423 - -
Lja3g0948 430 Gene3D - 132 304 - -
Lja3g0948 430 Gene3D - 315 416 - -
Lja3g0948 430 CDD ACT_CM-PDT 320 413 - -
Lja3g0948 430 PANTHER AROGENATE DEHYDRATASE 11 423 - -
Lja3g0948 430 SUPERFAMILY ACT-like 303 415 IPR045865 -
Lja3g0948 430 CDD PBP2_Ct-PDT_like 131 310 - -
Lja3g0948 430 Pfam Prephenate dehydratase 132 310 IPR001086 GO:0004664|GO:0009094
Lja3g0948 430 Gene3D - 211 297 - -
Lja3g0948 430 SUPERFAMILY Periplasmic binding protein-like II 131 314 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g0948 Lja-Chr3 9665747 9667761 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g0948 K05359 - gmx:100809331 705.286
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g0948 3 9665747 9667761 Lja3g0948 3 9665747 9667761 ECH
Lja3g3620 3 71696744 71698553 Lja3g0948 3 9665747 9667761 PCT