Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g0938 ATGGCTTCATCACGCGTGGATCTCGACGGCAACCCCATCGCGCCGCTCACAATCTGCATGATCGGCGCCGGCGGCTTCATCGGCTCCCACCTCTGCGAGAAGCTCATGTCCGAAACCCCTCACAAGGTTCTCGCCTTGGATGTCTACAGCGACAAGATCAAGCACCTCTTGGAACCCGACAACCTCCCTTGGCATGGCCGCATCCACTTCCACCGCCTCAACATCAAACACGATTCCAGGCTCGAGGGTCTCATCAAAATGGCAGATCTGACCATTAATCTCGCTGCTATTTGTACACCTGCTGATTACAACACCAGACCCCTTGATACCATTTACAGTAATTTCATTGATGCTCTTCCTGTGGTGAAGTATTGTTCTGAGAATAACAAGAGGCTTATCCATTTCTCTACTTGTGAAGTGTATGGGAAAACGATTGGAAGCTTTCTCCCCAAAGATAGTCCTCTTCGTCAGGATCCTGCATACTATGTTCTTAAAGAAGATGAGTCTCCTTGCATTTTTGGTTCAATCGAAAAGCAAAGGTGGTCATATGCTTGTGCTAAACAGTTGATTGAGAGGCTGATTTATGCTGAGGGTGCTGAAAATAACATGGAGTTCACGATTGTGAGGCCATTCAATTGGATTGGACCTAGAATGGACTTCATTCCTGGTATTGATGGTCCAAGTGAGGGTGTTCCTCGTGTTTTGGCATGTTTTAGCAATAATCTTCTTAGAGGAGAGCCCCTCAAGCTTGTGGATGGTGGCGAATCCCAGAGAACCTTTGTTTATATCAAAGATGCTATTGAAGCTGTCTTATTGATGATTGAAAATCCTGGCAGGGCTAATGGCCACATCTTTAATGTGGGTAACCCACACAATGAGGTTACTGTCAGGCAGCTTGCTGAAATGATGATTCAGGTCTATTCAAAGGTAAGCGGAGAACAAGCTCCTGAAACACCTACACTTGATGTGAGCTCAAAGGAATTTTACGGTGAGGGATATGATGACAGTGACAAGAGAATTCCTGACATGACCATAATAAACAGGCAGCTCGGATGGAATCCTAAGACATCACTTTGGGACCTGCTTGAATCCACCCTGACTTATCAGCACAGGACATATGCTGAAGCCGTCAAGAAAGCCATTGCAAAACCAATTGCTAGTTAA 1164 0.4596 MASSRVDLDGNPIAPLTICMIGAGGFIGSHLCEKLMSETPHKVLALDVYSDKIKHLLEPDNLPWHGRIHFHRLNIKHDSRLEGLIKMADLTINLAAICTPADYNTRPLDTIYSNFIDALPVVKYCSENNKRLIHFSTCEVYGKTIGSFLPKDSPLRQDPAYYVLKEDESPCIFGSIEKQRWSYACAKQLIERLIYAEGAENNMEFTIVRPFNWIGPRMDFIPGIDGPSEGVPRVLACFSNNLLRGEPLKLVDGGESQRTFVYIKDAIEAVLLMIENPGRANGHIFNVGNPHNEVTVRQLAEMMIQVYSKVSGEQAPETPTLDVSSKEFYGEGYDDSDKRIPDMTIINRQLGWNPKTSLWDLLESTLTYQHRTYAEAVKKAIAKPIAS* 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g0938 387 Pfam NAD dependent epimerase/dehydratase family 18 288 IPR001509 -
Lja3g0938 387 Gene3D - 16 379 - -
Lja3g0938 387 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 17 370 IPR036291 -
Lja3g0938 387 PANTHER BIFUNCTIONAL POLYMYXIN RESISTANCE PROTEIN ARNA 4 386 - -
Lja3g0938 387 PANTHER - 4 386 - -
Lja3g0938 387 CDD Arna_like_SDR_e 17 372 IPR045869 GO:0016831
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g0938 Lja-Chr3 9537248 9540737 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g0938 K12449 - gmx:100792879 749.199
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g0938 3 9537248 9540737 Lja3g0938 3 9537248 9540737 ECH
Lja3g3638 3 72159119 72162283 Lja3g0938 3 9537248 9540737 PCT