Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g0845 ATGTTCTGGAAGCTTCCCTCCATCTCCGCCTCATCTCCGGTGGATGCGATATTGGACAAGGATAATTTCACATTGGAAGAGCTTCTGGATGATGAGGAAATCATTCAAGAGTGCAAGGCCTTAAACAGTCGCCTCATCAACTTTCTAAGAGATAGAGCTCAAGTTGAGCAATTGCTGCGCTACATTATTGAAGAACCACCGGAAGATGCTGAAAACAAACGAGTTTTCAAGTTTCCATTCATTTCCTGTGAGGTCTTCACATGTGAAATTGATGTCATTTTGAAGACCTTGGTGGATGAAGAAGAGCTCATGAACTTATTATTCTCCTTCTTGGAACCTGATCGCTCTCATAGCACCTTGCTGGCTGGGTACTTTGGCAAGGTTGTTGTTTGCCTAATGATTCGAAAGACAGTACCACTGATCAATTATGTTAAAGCCCATCCACATGTTTTTCGCCAACTGGTTGATTTGATTGGCATTACATCTATTATGGAGGTTTTGGTTCGATTAGTAGGTGCTGATGACCATGCCTATCCCAATTTTATAGATGTGGTGCAATGGTTGGCTGAGAGCAACCTGCTAGAGATGATTGTTGATAAATTAAGTCCATCTAGTCCTCCTGAAGTTCATGCTAACGTAGCTGAAACATTATGTACAATAACTAGAATTCCTTCATCTACTCTTGCAATTAAGCTTTCAAGTCCAAGTTTTGTTGCAAAAATTTTGGAGTATGCATTGGAAGATTCAGAATCAAATTCAAGCCTTGTCAACTCACTTTCGGTGTGTATTTCTTTGCTGGATCCCAAAAAATCAGCTGTTTCATCTCAACTTTTTCATTCGTTCCGAAGTCAAAACATGTATGAGCCACCAATTCCTGTAAACCCAGATACTATTGGTGCAATGCTCCCTAAACTTGGTGAATTGCTTGTGCTTTTGAATGTGTCATCTGATAGCAAGATATTGCCTACAACGTATGGTGAATTGAGACCTCCACTTGGCAAACGTCGATTGAAGGTCGTGGAGTTTATTGCAGTACTTCTAAAAACTGGAAATGAAGTGGCAGAAAAAGAATTGGTCAACTCAGGAACCATCAGACGAGTTGTCGACCTTTTCTTTGAATATCCTTACCATAACGCATTACACCATCACGTGGAAAGTATCGTATTATCATGTTTGGAGAGCAAAACTGATGCAATTATTGATCATCTTCTTCGAGATTGTGATTTAATTGGAAGGTTTCTCCAAGCAGATAAACATTGTATTCTTTCTGCTGAAAACAATCAGGCAACAGTACCTGCTGCTGGGAAACGGGCAACGCGGGTAGGAAACATTGGACATATTACTCGAATTGTTAATAAACTTTTTCAGTTGGCTCATAACCAAAGTCACATCCTGACATATCTTCAGGAGAACAGCGAATGGAATGAGTGGCAAGCTACCGTTCTTCAGGAACGTAATGCAGTTGAGAATGTCAACCGTTGGGCTTGTGGGCGTCCTACTGCATTACAAGATAGAATGAGGGATAGCGATGACGATGATCTTCATGACAGAGACTATGATGTAGATTTAGGAAATAATTTGAACCAGGCTTTTAGATACAAAATTTATGGAACTGAGGATAATGAAGAGGAACGTGGCAGTCTTGATCGAGATGACGAGGATGTCTACTTTGACGATGGTTCTGCTGAAGTAGTCATATCATCCCTAAGACTTGGTGATGACCAAGGGAGCAATCTGTTCACAAACTCCAACTGGTTTGCGTTCCAAGATGACAGAATTGGTGATGCACCAGGTGATTCATCATCCCCTGAGATGATGGATGAAGTAAACTTGAATGGAGCTGTAAATGGTGGTGGCAGCAGTAGTGATGATGAGGTAGTAGTTGGAGAGGATGAAGACTTGACCGACAGCAAAAATACTGTGAATGGTACATCCAGCTCAAACACAAACTTCTTTAGTGGATTAAGCGGTAATCATTCCATGGATGAAGGTGCTGTAGATTTAGAAAATGAGAGGGCAAGCGCTTCGCATGATATGGGATTCTTCAGGTTTGAAGTACCCGACAATGAGGACTTGTTTGGGGATAGGCCTTTACCAGATTGGGTGGGATGGGGTGAACAATCAGAGATGCAAGTTGCTGGTTCAAGTATGAATCCCTTTTTGGATAATGACGAGTCTGGTAGCAATTCGCGTACTAAGCCTCACCTAGGCAGCACTGATCTGAGTTCTTCAAATGGGGAATCTGTATCTTCAAATGGTTTGCCAGCCACTGAGGATTCATTGGACGGTGGTGGTGATTCAAGCCAAAGATCCGTAGTAGTACCCTCCCTATTTGAAGAGGATGTGGAATTTGTAGGTGTAGAATTAGATGGTGCCGAGAAGGCAATGGACCAGGCTCTCAAAGAAGGAATAGTTGGGGAAGCAGGACCATTAAAAAGAAACCTAGTCCCAGAATTGCCAGAAAAGGAAAATTCCGATGAGGGCAGTCCGGGTGTGAAGGAGTTCAATGACGCAAATTACTGGAGGATTGACCAAGAGGTTGCTGTTCTAGAATGA 2556 0.4214 MFWKLPSISASSPVDAILDKDNFTLEELLDDEEIIQECKALNSRLINFLRDRAQVEQLLRYIIEEPPEDAENKRVFKFPFISCEVFTCEIDVILKTLVDEEELMNLLFSFLEPDRSHSTLLAGYFGKVVVCLMIRKTVPLINYVKAHPHVFRQLVDLIGITSIMEVLVRLVGADDHAYPNFIDVVQWLAESNLLEMIVDKLSPSSPPEVHANVAETLCTITRIPSSTLAIKLSSPSFVAKILEYALEDSESNSSLVNSLSVCISLLDPKKSAVSSQLFHSFRSQNMYEPPIPVNPDTIGAMLPKLGELLVLLNVSSDSKILPTTYGELRPPLGKRRLKVVEFIAVLLKTGNEVAEKELVNSGTIRRVVDLFFEYPYHNALHHHVESIVLSCLESKTDAIIDHLLRDCDLIGRFLQADKHCILSAENNQATVPAAGKRATRVGNIGHITRIVNKLFQLAHNQSHILTYLQENSEWNEWQATVLQERNAVENVNRWACGRPTALQDRMRDSDDDDLHDRDYDVDLGNNLNQAFRYKIYGTEDNEEERGSLDRDDEDVYFDDGSAEVVISSLRLGDDQGSNLFTNSNWFAFQDDRIGDAPGDSSSPEMMDEVNLNGAVNGGGSSSDDEVVVGEDEDLTDSKNTVNGTSSSNTNFFSGLSGNHSMDEGAVDLENERASASHDMGFFRFEVPDNEDLFGDRPLPDWVGWGEQSEMQVAGSSMNPFLDNDESGSNSRTKPHLGSTDLSSSNGESVSSNGLPATEDSLDGGGDSSQRSVVVPSLFEEDVEFVGVELDGAEKAMDQALKEGIVGEAGPLKRNLVPELPEKENSDEGSPGVKEFNDANYWRIDQEVAVLE* 852
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g0845 851 MobiDBLite consensus disorder prediction 595 656 - -
Lja3g0845 851 Pfam SIT4 phosphatase-associated protein 357 491 IPR007587 GO:0019903|GO:0043666
Lja3g0845 851 Pfam SIT4 phosphatase-associated protein 131 355 IPR007587 GO:0019903|GO:0043666
Lja3g0845 851 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE 6 REGULATORY SUBUNIT 2-LIKE ISOFORM X1 1 849 - -
Lja3g0845 851 MobiDBLite consensus disorder prediction 638 656 - -
Lja3g0845 851 MobiDBLite consensus disorder prediction 716 770 - -
Lja3g0845 851 PANTHER SIT4 YEAST -ASSOCIATING PROTEIN-RELATED 1 849 IPR007587 GO:0019903|GO:0043666
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g0845 Lja-Chr3 8587636 8596167 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g0845 K15501 - gmx:100805409 1411.74
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g0845 3 8587636 8596167 Lja3g0845 3 8587636 8596167 ECH
Lja3g3709 3 73518125 73528242 Lja3g0845 3 8587636 8596167 PCT