LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lja3g0840	ATGTCATCGTCGCAACCCAACTCCGACGCACCGCCGTCTCCTCCGTCACCACCGACAGAGGACGAGGCCACTGCTTCAATTGAACCCGGTTCAAGTTCTGCGTGGGTTCGAACCGGTTCGGAGCTCGAAATTGACGATGACGCTCCCTCCAGCCCTAGCAGCAGCGGTTACGCCGGCGAACAAGGCAGCACAAGTGCCACCAGTGGATCAGGAATCGAGATCGAACACGAACAGCAACAAGAAATCGAGGAGGAGGACCACCACCACCTGAATCGCCAAATCGACAATATCTCAATCTCTGATTCCCACACTTCCTGGATTCCCGGTAAACGAAATCTCGATGAGGATGATGCTTCGTTATCATGGAGGAAAAGGAAGAAGCATTTCTTCATTCTTAGTCATTCTGGCAAACCTATATACTCTAGGTATGGAGATGAACACAAGCTTGCAGGGTTTTCGGCAACTTTGCAAGCAATCATTTCATTTGTGGAGAATGGGGGTGACTCTGTCAAGTTGGTGAGAGCAGGGAAGCATCAGGTGGTTTTTCTAGTGAAAGGACCAATTTACTTGGTCTGCATTAGCTGCACGGAAGAACCGTATGAGTCATTACTGGGACAGTTGGAGCTAATTTATGGTCAGATGCTTGTTATACTGACAAAATCAGTAAACAGATGTTTTGAGAAGAACCCAAAGTTCGACATGACGCCCTTGCTTGGTGGAACAGATGTTGTCTTCTCTTCTCTAATCCACTCTTTCGGCTGGAACCCAGCTACCTTTCTTCATGCCTATACTTGTCTTCCTCTTGCATATGCAACAAGGCAAGCTGCTGGGGCTATCTTGCAAGACATTGCTGATTCAGGTGTTTTGTTTGCTATACTGATGTGCAGGAACAAGGTAATCAGTCTTGTTGGTGCTCAGAAAGCTTCCCTTCATCCAGATGATCTACTTCTACTGGCCAACTTTGTTATGTCCTCAGAATCCTTCAGGACGTCAGAATCATTTTCTCCAGTTTGCTTGCCAAGATATAATCCTTCAGCATTTTTGTATGCTTATATCCATTATTTTGATGCTGACACATATTTGATGTTGCTAACCACTAGTTCAGATGCATTTTATCATCTTAAGGATTGCAGGATTCGTGTTGAAATGGTCCTCTTGAAATCAAACGTCCTTAGTGAAGTTCAGAGATCCTTGCTAGATGGGGGAATGCATGTTGAGGATCTCCCAGCAGCACCTAATTCTGGATCATCTCATTTGGGCCAGCACACACTTCCATCAGAATCTCCTCAAAGATTTAACGAACCTAATCATGCGATTTGTGGTCCTGCTGGGTTGTGGCATTTCATATACCGTAGTATATATCTGGATCAATATGTCTCTTCAGAGTTCCCATCATCAATTAATACTCTTGGACAGCAGAAAAGACTATATAGAGCCTACCAGAAACTTTTTGCATCCATGCACGATAAAGGAATCCGGCCGCACAAAACTCAATTTAGAAGAGATGAAAACTACGTTCTTCTATGTTGGGTGACACAGGATTTTGAGCTTTATGCTGCCTTTGATCCCCTTGCAGACAAGGCCCTGGCAATAAAGACTTGCAACCATGTCTGTCAATGGATAAAAGATGTGGAAAATGAAATATTTTTGCTAGGAGCTAGCCCCTTTTCATGGTGA	1677	0.4466	MSSSQPNSDAPPSPPSPPTEDEATASIEPGSSSAWVRTGSELEIDDDAPSSPSSSGYAGEQGSTSATSGSGIEIEHEQQQEIEEEDHHHLNRQIDNISISDSHTSWIPGKRNLDEDDASLSWRKRKKHFFILSHSGKPIYSRYGDEHKLAGFSATLQAIISFVENGGDSVKLVRAGKHQVVFLVKGPIYLVCISCTEEPYESLLGQLELIYGQMLVILTKSVNRCFEKNPKFDMTPLLGGTDVVFSSLIHSFGWNPATFLHAYTCLPLAYATRQAAGAILQDIADSGVLFAILMCRNKVISLVGAQKASLHPDDLLLLANFVMSSESFRTSESFSPVCLPRYNPSAFLYAYIHYFDADTYLMLLTTSSDAFYHLKDCRIRVEMVLLKSNVLSEVQRSLLDGGMHVEDLPAAPNSGSSHLGQHTLPSESPQRFNEPNHAICGPAGLWHFIYRSIYLDQYVSSEFPSSINTLGQQKRLYRAYQKLFASMHDKGIRPHKTQFRRDENYVLLCWVTQDFELYAAFDPLADKALAIKTCNHVCQWIKDVENEIFLLGASPFSW*	559

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lja3g0840	558	PANTHER	BNAC04G15860D PROTEIN	34	558	-	-
	Lja3g0840	558	PANTHER	SAND PROTEIN-RELATED	34	558	IPR004353	GO:0006623
	Lja3g0840	558	Pfam	Third Longin domain of FUZ, MON1 and HPS1	444	545	IPR043970	GO:0016192
	Lja3g0840	558	Pfam	First Longin domain of FUZ, MON1 and HPS1	127	248	IPR043972	GO:0016192
	Lja3g0840	558	MobiDBLite	consensus disorder prediction	47	75	-	-
	Lja3g0840	558	PRINTS	Saccharomyces cerevisiae 73.5kDa hypothetical protein signature	145	165	IPR004353	GO:0006623
	Lja3g0840	558	PRINTS	Saccharomyces cerevisiae 73.5kDa hypothetical protein signature	127	144	IPR004353	GO:0006623
	Lja3g0840	558	PRINTS	Saccharomyces cerevisiae 73.5kDa hypothetical protein signature	360	386	IPR004353	GO:0006623
	Lja3g0840	558	PRINTS	Saccharomyces cerevisiae 73.5kDa hypothetical protein signature	179	193	IPR004353	GO:0006623
	Lja3g0840	558	PRINTS	Saccharomyces cerevisiae 73.5kDa hypothetical protein signature	332	355	IPR004353	GO:0006623
	Lja3g0840	558	PRINTS	Saccharomyces cerevisiae 73.5kDa hypothetical protein signature	283	296	IPR004353	GO:0006623
	Lja3g0840	558	PRINTS	Saccharomyces cerevisiae 73.5kDa hypothetical protein signature	259	280	IPR004353	GO:0006623
	Lja3g0840	558	PRINTS	Saccharomyces cerevisiae 73.5kDa hypothetical protein signature	507	521	IPR004353	GO:0006623
	Lja3g0840	558	PRINTS	Saccharomyces cerevisiae 73.5kDa hypothetical protein signature	523	536	IPR004353	GO:0006623
	Lja3g0840	558	PRINTS	Saccharomyces cerevisiae 73.5kDa hypothetical protein signature	230	242	IPR004353	GO:0006623
	Lja3g0840	558	PRINTS	Saccharomyces cerevisiae 73.5kDa hypothetical protein signature	536	556	IPR004353	GO:0006623
	Lja3g0840	558	PRINTS	Saccharomyces cerevisiae 73.5kDa hypothetical protein signature	307	323	IPR004353	GO:0006623
	Lja3g0840	558	MobiDBLite	consensus disorder prediction	1	82	-	-
	Lja3g0840	558	Pfam	Second Longin domain of FUZ, MON1 and HPS1	288	380	IPR043971	GO:0016192

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lja3g0840	Lja-Chr3	8526433	8532232	Dispersed/Wgd

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lja3g0840	K20195		-	zju:107411372	863.988

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Lja3g0840	3	8526433	8532232	Lja3g0840	3	8526433	8532232	ECH
	Lja3g3712	3	73568317	73573372	Lja3g0840	3	8526433	8532232	PCT