Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g0622 ATGCAGAAGCCACCAAATTCCCATGAGTTTGCCTTGAAGGAGACCTCGCCCAACATTGGGGCTGGGGCAGTCACAGGGGACAAGCTATCATGCACCTATGACCTGGTTGAACAGATGCAGTATCTATATGTTCGTGTCGTCAAAGCCAAGGACTTGCCTGCAAAAGATGTCACGGGTAGTCTTGATCCTTATGTTGAAGTGAAGCTTGGAAACTACAAGGGACTCACCAAGCACTTTGAGAAGAAGTCTAATCCTGAGTGGAATCAAATCTTTGCCTTCTCCAAAGATCGGATTCAAGCTTCAGTTTTGGAGGTGGTTGTGAAGGATAAAGATGTTATTGTAGATGACTTTGTTGGGAGGGTGTGGTTTGATATGAATGAGATCCCGAAACGTGTTCCCCCAGATAGTCCTTTGGCTTCACAGTGGTATAGGCTTGAAGATCGCAAGGGCCAAAAGGTTAAAGGAGAGCTAATGCTGGCAGTTTGGATGGGAACTCAAGCAGATGAGGCATTTCCTGATTCTTGGCATTCTGATGCAGCATTGGTTGGCCCTGAAGCAGTTGCTAACATAAGATCAAAAGTTTACCTCTCCCCAAAGCTTTGGTATCTTCGAGTCAATGTAATTGAAGCTCAGGACTTGGTACCGGGTGATAAAACCCGATATCCTGAAGTTTTTGCGAAGGTTCATTTAGGGAATCAGGTTCTAAGAACTAGAACATCTCAAAGCAAGACCATAAACCCAATTTGGAATGAGGACTTGATGTTTGTTGCAGCTGAGCCGTTTGAGGAGCCTTTAGTTCTGACTGTGGAAGACAGGGTTGGACAAAACAAAGATGAAATCCTCGGAAGGTGCATGATTCCATTACAGATGCTGCAAAGGAGGTTAGACCACAAGCCTGTGAACAGCAGGTGGTTTAATCTTGAGAAGCATTTGGTTGTTGAAGGGGAAAAGAAGGACATAAAATTTGCAAGCAGGATACACTTGAGGGCATGCTTGGATGGTGGATACCATGTGTTAGATGAATCAACTCATCACAGTAGTGATCTTAGACCAACCGCGAAGCAGCTATGGAAGCCAAGCATTGGGATTCTGGAAGTGGGAATTATAAGTGCTCATGGGTTGGTGCCGATGAAGACAAGAGATGGTAGAGGAACCACTGATGCTTATTGCGTAGCAAAGTATGGACAGAAATGGATCCGCACTAGAACAATCGTAGATAGCTTTAGTCCAAAGTGGAATGAGCAGTACACATGGGAAGTGTTTGACCCAGCCACTGTTATCACATTTGGTGTCTTTGATAATGCTCATATACAAGGAGGAGATGGATCCAAAGATTCTAGGATCGGGAAGGTGAGAATTAGGCTCTCTACTCTGGAAAGTGGTAGGATTTACACACATTCATATCCTCTTATAGTGCTGCATACATCAGGTGTGAAGAAAACAGGGGAAGTGCAATTGGCTGTCAGGTTTACATGCGTATCTTTCATCAACATGTTGTGTATGTATTCACAGCCATTGTTGCCAAAGATGCACTACATCCATCCTCTGTCTGTGATGCAGTTAGACAGTTTAAGGCATCACGGCACACAGATTGTATCAATGAGGTTGAGCCGGGCTGAGCCGCCGCTGAGGAAAGAGGTTGTGGAATACATGCTTGATGTGGATTCACACATGTGGAGCATGAGAAGAAGCAAAGCTAATTTCTTCAGAATAATGAAAGTTTTAAGCAGTTTGATAGCATTTGGGAGGTGGTTTGATCAGATTTGCAATTGGAAAAACCCCATCACATCGATACTAATTCACATCCTTTTCATAATATTGGTTCTTTACCCTGAGCTGATACTCCCCACAATTTTCTTGTACCTGTTCTTGATTGGGATTTGGAACTTCAGGTGGAGGCCAAGGCACCCTCCCCACATGGACACTAGGCTCTCTCATGCTGATGCTGCTTATCCTGATGAGTTAGATGAAGAGTTTGATTCATTCCCGACTTCGCGGCCAGCGGATATTGTTCGGATGAGATATGACCGTTTGAGAAGCATTGGCGGGAGGGTGCAGTCTGTTGTAGGTGACTTGGCTACTCAAGGAGAAAGGTTCCAGAGTTTGATAAGTTGGAGAGATCCAAGAGCTACCACTCTCTTTGTGACATTCTGTTTAATTGCTGCTATAGTTCTTTATGTTACTCCCTTTCAGGTTGTGTGTCTTCTCTTTGGCTTCTACGTGCTGAGGCACCCGAGATTCCGCCAGAAACTTCCATCAGTGCCGCTCAACTTCTTTAGGAGGCTACCTGCTAGATCAGATAGCATGTTGTGA 2313 0.4466 MQKPPNSHEFALKETSPNIGAGAVTGDKLSCTYDLVEQMQYLYVRVVKAKDLPAKDVTGSLDPYVEVKLGNYKGLTKHFEKKSNPEWNQIFAFSKDRIQASVLEVVVKDKDVIVDDFVGRVWFDMNEIPKRVPPDSPLASQWYRLEDRKGQKVKGELMLAVWMGTQADEAFPDSWHSDAALVGPEAVANIRSKVYLSPKLWYLRVNVIEAQDLVPGDKTRYPEVFAKVHLGNQVLRTRTSQSKTINPIWNEDLMFVAAEPFEEPLVLTVEDRVGQNKDEILGRCMIPLQMLQRRLDHKPVNSRWFNLEKHLVVEGEKKDIKFASRIHLRACLDGGYHVLDESTHHSSDLRPTAKQLWKPSIGILEVGIISAHGLVPMKTRDGRGTTDAYCVAKYGQKWIRTRTIVDSFSPKWNEQYTWEVFDPATVITFGVFDNAHIQGGDGSKDSRIGKVRIRLSTLESGRIYTHSYPLIVLHTSGVKKTGEVQLAVRFTCVSFINMLCMYSQPLLPKMHYIHPLSVMQLDSLRHHGTQIVSMRLSRAEPPLRKEVVEYMLDVDSHMWSMRRSKANFFRIMKVLSSLIAFGRWFDQICNWKNPITSILIHILFIILVLYPELILPTIFLYLFLIGIWNFRWRPRHPPHMDTRLSHADAAYPDELDEEFDSFPTSRPADIVRMRYDRLRSIGGRVQSVVGDLATQGERFQSLISWRDPRATTLFVTFCLIAAIVLYVTPFQVVCLLFGFYVLRHPRFRQKLPSVPLNFFRRLPARSDSML* 771
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g0622 770 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 41 179 IPR035892 -
Lja3g0622 770 Gene3D C2 domain 32 164 IPR035892 -
Lja3g0622 770 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 362 492 IPR035892 -
Lja3g0622 770 Gene3D C2 domain 187 331 IPR035892 -
Lja3g0622 770 CDD C2B_MCTP_PRT_plant 41 165 - -
Lja3g0622 770 ProSiteProfiles C2 domain profile. 23 143 IPR000008 -
Lja3g0622 770 ProSiteProfiles C2 domain profile. 345 468 IPR000008 -
Lja3g0622 770 PANTHER C2 CALCIUM/LIPID-BINDING PLANT PHOSPHORIBOSYLTRANSFERASE FAMILY PROTEIN 6 770 - -
Lja3g0622 770 CDD C2C_MCTP_PRT_plant 202 351 - -
Lja3g0622 770 Pfam Plant phosphoribosyltransferase C-terminal 615 770 IPR013583 -
Lja3g0622 770 ProSiteProfiles C2 domain profile. 184 305 IPR000008 -
Lja3g0622 770 SMART C2_3c 363 467 IPR000008 -
Lja3g0622 770 SMART C2_3c 202 300 IPR000008 -
Lja3g0622 770 SMART C2_3c 41 137 IPR000008 -
Lja3g0622 770 PANTHER ANTHRANILATE PHOSPHORIBOSYLTRANSFERASE-LIKE PROTEIN 6 770 - -
Lja3g0622 770 Pfam C2 domain 41 143 IPR000008 -
Lja3g0622 770 Pfam C2 domain 201 307 IPR000008 -
Lja3g0622 770 Pfam C2 domain 362 470 IPR000008 -
Lja3g0622 770 Gene3D C2 domain 339 491 IPR035892 -
Lja3g0622 770 CDD C2D_MCTP_PRT_plant 363 487 - -
Lja3g0622 770 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 201 353 IPR035892 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g0622 Lja-Chr3 6205991 6209282 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g0622 1 770 Lipid Metabolism Gene Families AT3G57880 80.879 0.0 1342
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g0622 - - gmx:100788273 1403.27
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g0622 3 6205991 6209282 Lja3g0622 3 6205991 6209282 ECH
Lja3g0622 3 6205991 6209282 Lja3g2688 3 38741104 38743416 ECH
Lja3g2688 3 38741104 38743416 Lja3g0622 3 6205991 6209282 PCT