Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g3024 ATGGCTGTCTCAACTTCTTCACTCCCCAACTTCCTCTCCTTCCTGTTACCCACAAAACAACCGTCACCACCGCCGCAACTGAACTTGCCTTCATCATCGCCGCTCCCTTCTCACACCCTCAAGATGATGAAACCCTCTCACAACTCAGCGTCTCCAACGACACCACGCCGCGACGGTCCTTCTTGTGACGAACTGTCTTCCGTGGTGTGCCCTTCCTTGGCGTACTCGAACACGTTATTCTTCCGATCCGCGTACAACGTCCAGGTGGTGGTCGGAGAGGAAGAGGGGGAGGAGAGGCTGCTCAACAGGTTCCGGCGAGAAGTGATGAAGGCCGGTGTCATTCAAGAGTGCAAGAGGAGAAGGTTCTTCGAGAACAAGCAGGACGAGAAGAAACGCAAGCACCGTGACGCTGCTAAACGTGCTAGTCGTGCAAGGCGCCCTTTCACTAAATTTTCAGCACAGAACAAGCAGGATGTCCCAACAACAACCAAGAAGGTAGAAGACGACGATAACTGGGACCTTCCTGAAGGAGACTTATTGACCAATTGA 549 0.5301 MAVSTSSLPNFLSFLLPTKQPSPPPQLNLPSSSPLPSHTLKMMKPSHNSASPTTPRRDGPSCDELSSVVCPSLAYSNTLFFRSAYNVQVVVGEEEGEERLLNRFRREVMKAGVIQECKRRRFFENKQDEKKRKHRDAAKRASRARRPFTKFSAQNKQDVPTTTKKVEDDDNWDLPEGDLLTN* 183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g3024 182 Pfam Ribosomal protein S21 88 140 IPR001911 GO:0003735|GO:0005840|GO:0006412
Lja2g3024 182 MobiDBLite consensus disorder prediction 125 182 - -
Lja2g3024 182 PRINTS Ribosomal protein S21 family signature 122 132 IPR001911 GO:0003735|GO:0005840|GO:0006412
Lja2g3024 182 PRINTS Ribosomal protein S21 family signature 110 120 IPR001911 GO:0003735|GO:0005840|GO:0006412
Lja2g3024 182 PRINTS Ribosomal protein S21 family signature 98 107 IPR001911 GO:0003735|GO:0005840|GO:0006412
Lja2g3024 182 MobiDBLite consensus disorder prediction 14 63 - -
Lja2g3024 182 Gene3D Ribosomal protein S8 101 139 IPR038380 -
Lja2g3024 182 PANTHER PROTEIN S21 FAMILY PROTEIN, PUTATIVE-RELATED 1 179 - -
Lja2g3024 182 TIGRFAM S21p: ribosomal protein bS21 87 143 IPR001911 GO:0003735|GO:0005840|GO:0006412
Lja2g3024 182 MobiDBLite consensus disorder prediction 32 56 - -
Lja2g3024 182 Hamap 30S ribosomal protein S21 [rpsU]. 86 142 IPR001911 GO:0003735|GO:0005840|GO:0006412
Lja2g3024 182 PANTHER MITOCHONDRIAL 28S RIBOSOMAL PROTEIN S21 1 179 IPR001911 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g3024 Lja-Chr2 60782409 60784191 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g3024 - - egr:104419145 169.474
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g3024 2 60782409 60784191 Lja2g3024 2 60782409 60784191 ECH
Lja1g1777 1 20076358 20077678 Lja2g3024 2 60782409 60784191 PCT