Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g1777 ATGGCTGCCTCATCCTCCTTCTTCTCTTTTCTTCTACCACCAAAACCAAAACCACCCCAATTCACTCTCACCTTCCCTCACTCTGACGATCTTCACCCATCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTGCTGTTTCTGCTGCTTCATCAGAGTTATCCTCTGTGATTTGTCCCTCTCTTGCAAATGCCAACACCCTCTTCTTCCGATCAGCGTACAATGTGCAGGTGGTTGTGGCCGAAAACGAGAATGAGGAGAGGCTGCTCAACAGGTTCCGAAGAGAGGTGATGAAAGCAGGTGTCATTCAAGAGTCCAAGAGGAGAAGGTACTTTGAGAACAAGCAGGATGAGAAGAAGCGCAAGACTCGCGAAGCTGCCAAGCGTAACAAAAGAAGCAGGCGCACTGAGTGGAAACCTCCAATGCAGAACAAGCAGGAGGTCCCAACAACCAAGAAGGAAGTGGATGATGATAATTGGGATATGCCTGAAGATGCTTGA 504 0.4762 MAASSSFFSFLLPPKPKPPQFTLTFPHSDDLHPSSSSSSSSSSSSSAVSAASSELSSVICPSLANANTLFFRSAYNVQVVVAENENEERLLNRFRREVMKAGVIQESKRRRYFENKQDEKKRKTREAAKRNKRSRRTEWKPPMQNKQEVPTTKKEVDDDNWDMPEDA* 168
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g1777 167 PANTHER MITOCHONDRIAL 28S RIBOSOMAL PROTEIN S21 12 165 IPR001911 GO:0003735|GO:0005840|GO:0006412
Lja1g1777 167 Coils Coil 77 97 - -
Lja1g1777 167 MobiDBLite consensus disorder prediction 114 142 - -
Lja1g1777 167 Gene3D Ribosomal protein S8 91 129 IPR038380 -
Lja1g1777 167 MobiDBLite consensus disorder prediction 27 47 - -
Lja1g1777 167 TIGRFAM S21p: ribosomal protein bS21 77 133 IPR001911 GO:0003735|GO:0005840|GO:0006412
Lja1g1777 167 MobiDBLite consensus disorder prediction 114 167 - -
Lja1g1777 167 Hamap 30S ribosomal protein S21 [rpsU]. 76 132 IPR001911 GO:0003735|GO:0005840|GO:0006412
Lja1g1777 167 MobiDBLite consensus disorder prediction 21 47 - -
Lja1g1777 167 PANTHER PROTEIN S21 FAMILY PROTEIN, PUTATIVE-RELATED 12 165 - -
Lja1g1777 167 PRINTS Ribosomal protein S21 family signature 80 88 IPR001911 GO:0003735|GO:0005840|GO:0006412
Lja1g1777 167 PRINTS Ribosomal protein S21 family signature 112 122 IPR001911 GO:0003735|GO:0005840|GO:0006412
Lja1g1777 167 PRINTS Ribosomal protein S21 family signature 100 110 IPR001911 GO:0003735|GO:0005840|GO:0006412
Lja1g1777 167 PRINTS Ribosomal protein S21 family signature 88 97 IPR001911 GO:0003735|GO:0005840|GO:0006412
Lja1g1777 167 Pfam Ribosomal protein S21 78 131 IPR001911 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g1777 Lja-Chr1 20076358 20077678 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g1777 - - cmo:103491780 154.066
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g1777 1 20076358 20077678 Lja1g1777 1 20076358 20077678 ECH
Lja1g1777 1 20076358 20077678 Lja2g3024 2 60782409 60784191 PCT