Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g2979 ATGGGGGTTCGTGTTGATTCACAGAACTCGTGTCCATGGAGTTTCGTGACTAGGAGGAAGAAGGTGGATTCTGCAGGGACGACCAGCAACGACTCTGAGAACCAACTTGCCAAGGAGTTAACTGTTCCGCATCTCATGGCAATTGGCGTGGGTGCTACGGTTGGTGCTGGTGTGTATGTTCTGGTTGGAACGGTGGCGCGTGAGCACGCTGGACCGGCTTTGCCGCTTTCGTTTCTGGTTGCTGGATTTGCAGCTGCTCTCTCAGCTCTCTGCTATGCGGAGTTGGCTAGTCGCTGTCCTTCTGCTGGGAGTGCGTATCACTATTCATACATATGTGTTGGGGAAGGAGTTGCTTGGTTGGTTGGTTGGGCCTTAATATTGGAATATACAATTGGTGGAGCTGCTGTTGCTCGTGGCATAACCCCCAATATGGCTGCACTTATTGGAGGAGTGGACAATTTGCCCAGCTTTCTAGCGAGTCACCGTATTCCTGGGATTGACATTGTTGTAGACCCTTGTGCAGCAATTATAGTATTTATAATTACTGGACTTCTTTGTACTGGGATCAAAGAGAGCACAATGGTACAAAGTGTAGTCACATCAGTGAACATATGTGCTTTGATTTTTGTCATAGTAGCTGGTGGTTACTTGGGATTCAAATCTGGATGGGTTGGATATCAACTTCCTACTGGGTATTTTCCATTTGGGGTAGATGGGATGCTTGCTGGTTCAGCAACAGTCTTTTTTGCATATATAGGATTTGATGCAGTTGCCAGCACTGCTGAAGAGGTGAAAAATCCTCAACGAGATCTGCCACTGGGTATTGGTGCATCACTATTTCTCTGTTGTGGATTATACATGATGGTTTCCATTGTTGTTGTCGGTTTAGTACCTTATTATGCTATCCATTCTGAGACCCCCATATCATCTGCATTTGCTGACAATGGGATGCAATGGGCAGCATACGTTGTAAATGCTGGGGCCTTTACAGCTCTATGCTCAGCATTGATGGGTGGGATATTGCCTCAGCCAAGAATTTTGATGGCTATGGCAAGGGATGGGCTTCTGCCACAATTTTTTTCAGACATAAATAAGCGCACTCAGGTTCCTGTGAAGGGTACAATAGCTACTGGCCTTGGTGCTGCAGTCTTGGCATTTACCATGGAAGTCTCTGAATTGGCTGGGATGGTTAGTGTGGGTACACTTCTTGCATTCACCACGGTGGCAATCTCTGTATTGATACTGAGATATATTCCACCAGATGTGGTTCCATTGCCCCCTTCTCTCCAAGAACCAATTGAATATAGTTGGAGCCATTCAGAGACAAATGAAAAGGATACAGAGGCAAATGGTGCTACTTCTGGGAATAAAAAACCTTTACTTGTTAAAGAGGATGTAACAATTGATTATCCCTTTAATTGTAAATATCTTGCTGTAGAGAACTATATTCATAATGGTAATAGGCGAAAATTTATTGGTTGGGTAATAGCTTTCACATGTTTGGGCGTGTTTGTCCTTACATTTGCAGCTTCAAATATAACTCTTCTCAGTTCTCTTCGCTTTGCATTATGTGGAATTGGTGGGACTCTTCTTTTGTCTGGTTTTGTCTTCCTAACCTGTATGGAGCAAGATGATGCAAGACACAACTTTGGGCACTCAGGAGGTTTCATTTGCCCATTTGTGCCTCTGCTGCCTATAGCTTGCATTCTCATCAATTGCTATTTACTTATTAATCTTGGGTCTGATACTTGGGCACGTGTTTCCATATGGCTAGCATTAGGAGTAATTGTTTATGTTTTATATGGCCGAACCCATAGTTCTCTAAAAGATGCAGTTTATGTCCCTGCAACTCATGTGGATAATACCTATCAGTCCTCTACAAGCTGTCTTGCTTAA 1896 0.4393 MGVRVDSQNSCPWSFVTRRKKVDSAGTTSNDSENQLAKELTVPHLMAIGVGATVGAGVYVLVGTVAREHAGPALPLSFLVAGFAAALSALCYAELASRCPSAGSAYHYSYICVGEGVAWLVGWALILEYTIGGAAVARGITPNMAALIGGVDNLPSFLASHRIPGIDIVVDPCAAIIVFIITGLLCTGIKESTMVQSVVTSVNICALIFVIVAGGYLGFKSGWVGYQLPTGYFPFGVDGMLAGSATVFFAYIGFDAVASTAEEVKNPQRDLPLGIGASLFLCCGLYMMVSIVVVGLVPYYAIHSETPISSAFADNGMQWAAYVVNAGAFTALCSALMGGILPQPRILMAMARDGLLPQFFSDINKRTQVPVKGTIATGLGAAVLAFTMEVSELAGMVSVGTLLAFTTVAISVLILRYIPPDVVPLPPSLQEPIEYSWSHSETNEKDTEANGATSGNKKPLLVKEDVTIDYPFNCKYLAVENYIHNGNRRKFIGWVIAFTCLGVFVLTFAASNITLLSSLRFALCGIGGTLLLSGFVFLTCMEQDDARHNFGHSGGFICPFVPLLPIACILINCYLLINLGSDTWARVSIWLALGVIVYVLYGRTHSSLKDAVYVPATHVDNTYQSSTSCLA* 632
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g2979 631 Pfam C-terminus of AA_permease 556 606 IPR029485 -
Lja2g2979 631 Gene3D Amino acid/polyamine transporter I 475 620 - -
Lja2g2979 631 Gene3D Amino acid/polyamine transporter I 36 432 - -
Lja2g2979 631 PANTHER INNER MEMBRANE TRANSPORTER YGJI-RELATED 9 623 - -
Lja2g2979 631 Pfam Amino acid permease 45 421 IPR002293 GO:0016020|GO:0022857|GO:0055085
Lja2g2979 631 PANTHER PROTEIN, PUTATIVE-RELATED 9 623 - -
Lja2g2979 631 PIRSF AA_transporter 475 613 - -
Lja2g2979 631 PIRSF AA_transporter 17 425 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g2979 Lja-Chr2 56138084 56156138 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g2979 16 631 Organic Solute Cotransporters AT5G36940 66.236 0.0 809
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g2979 K13863 - gmx:100820395 1007.28
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g1538 1 16669966 16676929 Lja2g2979 2 56138084 56156138 PCT