Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g1538 ATGGGTGTTTCGGTTGTTTCACCACAATTACAAGAGGCTTCATGGGGTGGATCCTTGAGGTTTTTCACTCGGAGGAAGCATGTTGATTCTGCTCGTAAGAACCCTGATAGTCTGCTTGCAAAGGAGTTAACTGTTCTTCATCTCATTGCAGTTGGTGTTGGTTCAACAATTGGCGCTGGAGTATATGTTTTGGTTGGAACAGTTGCTCGAGAGCAAGCTGGACCAGCCATAGCCATTTCTTTTCTGGTTGCTGGATTAGCTGCTGGTCTTTCTGCTTTTTGCTATGCAGAGCTGGCTTGTCGTTTTCCTTCAGCTGGAAGTGCATATCACTATTCATACATATGTCTTGGGGAAGGTGTTGCTTGGTTGATCGGTTGGTCCTTGCTACTGGAATATACAATTGGTAGCGCTGCTGTCGCTCGTGGCATAACCCCAAATTTGGCTTCACTTTTTGGGGGTATGGACAATTTACCAATCTTTTTATCACGCCAGCATATTCCTGGGATTGATATTGTTGTGGACCCATGTGCAGCAATTTTGGTATTTATTGTTACCGGACTCCTGTGTGTGGGGATCAAGGAGAGTGCAGTGGTACAAGGCATAGTCACATCAGTAAATATATGTGCATTGCTTTTTGTCATTGCAGCTGGTGGTTATTTGGGTTTCAAGTCTGGATGGGTTGGATATGAACTTCAATCTGGGTTTTTCCCCTTTGGGTTTGATGGGATGCTTGCTGGTTCTGCAACAGTCTTCTTTGCATATGTAGGTTTTGATGCTGTTGCCAGTACTGCTGAAGAGGTGAAAAATCCTCAAAGAGATTTGCCTCTAGGTATTGGCGGTTCACTGTTTCTTTGTTGTGGAATGTATGTGATGGTGTCCATTGTTGTAGTTGGTTTAGTACCTTATTATGCGATGGATCTGGATACCCCCATATCATCTGCATTTGCTGACCATGGAATGCAATGGGCAGCTTACATTCTAAATGCTGGAGCTTTCACAGCTCTCTTGTCCGCATTGATGGGTGGGATACTTCCCCAGCCAAGAGTTATGATGGCTATGGCAAGGGATGGACTACTGCCGCCATTTTTTTCTGACATAAATCAGCACAGTCAGGTTCCTGTGAAAGGCACAATAATTACTGGCCTTGGGGCTGCAATCTTGGCATTTTCTATGGAAGTCTCTCAACTGACAGGGATGGTTAGTGTGGGTACGCTTTTAGCATTCACCATTGTAGCAATATGTGTGTTGATACTAAGGTATATCCCTCCAAATGAAGTTCCGTTGCCTCCTTCTATCCAGGATTCAATTACTTCAGTGTCAACGGGGTATAGTTTGAGCAGTGCAGAGAGCAATGTAGAATATGCAGAGGCATATGCCAGTATTTCCGAGGACTCAAAACCCTTAGTTGTTAAGGAGGATGTTTCCATTCGTTATCCTCTCATTGCTAAACATCTTGGCATAGGCTACTATCTGAATGATGGTAACAGACGAAGAGTTGTTGGGTGGAGCATAACATTCATATGCTTAGGGGCGTTTGTCCTCACATATGCAACTTCATATATACCTCTTATTTTTGTTCGCTTTGTGCTATGTGGAGTTGGCGGTATTCTTCTTGTGTCTGGTCTTGTCTTCCTAACCTGTATAGATCAAGATGATGCAAGGCACAACTTTGGGCACTCTGGAGGTTTCATATGCCCATTTGTGCCACAGCTGCCTATAGCTTGCATTCTTATCAATTCCTACCTACTTATCAATCTCGGTGGAGCTACATGGTTGCGGGTTTCGGTGTGGCTGGCAGCAGGACTACTAATTTATGTGTTTTATGGCCGAAACCATAGCACTCTAAAAGAAGTAGCTTATATACCAGCAAGGCAGGTGAATGATGCAATTTATGAACCTCTCTTCTGCAAAATAAATTAG 1920 0.438 MGVSVVSPQLQEASWGGSLRFFTRRKHVDSARKNPDSLLAKELTVLHLIAVGVGSTIGAGVYVLVGTVAREQAGPAIAISFLVAGLAAGLSAFCYAELACRFPSAGSAYHYSYICLGEGVAWLIGWSLLLEYTIGSAAVARGITPNLASLFGGMDNLPIFLSRQHIPGIDIVVDPCAAILVFIVTGLLCVGIKESAVVQGIVTSVNICALLFVIAAGGYLGFKSGWVGYELQSGFFPFGFDGMLAGSATVFFAYVGFDAVASTAEEVKNPQRDLPLGIGGSLFLCCGMYVMVSIVVVGLVPYYAMDLDTPISSAFADHGMQWAAYILNAGAFTALLSALMGGILPQPRVMMAMARDGLLPPFFSDINQHSQVPVKGTIITGLGAAILAFSMEVSQLTGMVSVGTLLAFTIVAICVLILRYIPPNEVPLPPSIQDSITSVSTGYSLSSAESNVEYAEAYASISEDSKPLVVKEDVSIRYPLIAKHLGIGYYLNDGNRRRVVGWSITFICLGAFVLTYATSYIPLIFVRFVLCGVGGILLVSGLVFLTCIDQDDARHNFGHSGGFICPFVPQLPIACILINSYLLINLGGATWLRVSVWLAAGLLIYVFYGRNHSTLKEVAYIPARQVNDAIYEPLFCKIN* 640
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g1538 639 PANTHER INNER MEMBRANE TRANSPORTER YGJI-RELATED 17 627 - -
Lja1g1538 639 Gene3D Amino acid/polyamine transporter I 39 445 - -
Lja1g1538 639 PIRSF AA_transporter 490 618 - -
Lja1g1538 639 PIRSF AA_transporter 24 428 - -
Lja1g1538 639 Pfam Amino acid permease 44 425 IPR002293 GO:0016020|GO:0022857|GO:0055085
Lja1g1538 639 PANTHER PROTEIN, PUTATIVE-RELATED 17 627 - -
Lja1g1538 639 Pfam C-terminus of AA_permease 563 613 IPR029485 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g1538 Lja-Chr1 16669966 16676929 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g1538 17 628 Organic Solute Cotransporters AT5G36940 63.548 0.0 771
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g1538 K13863 - gmx:100784895 982.63
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g1538 1 16669966 16676929 Lja2g2979 2 56138084 56156138 PCT