Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g2966 ATGGCATCCCATATTGTTGGATACCCTCGTATGGGCCCTAAGAGAGAGCTCAAGTTCGCCCTGGAGTCATTCTGGGATGGGAAGAGCAGTGCTGAGGATTTGAAGAAGGTGGCAGCTGGTCTCAGGGCATCCATCTGGAAGCAGATGGCTGATGCCGGGATCAAGTACATCCCCAGCAACACATTCTCCTACTACGATCAGGTGCTTGATGCCACCGCAATGCTCGGCGCTGTTCCACCCCGATACGGGTGGACTGGCGGGGAGATTGGATTTGATACTTACTTCTCCATGGCTAGGGGTAATGCCTCTGTGCCTGCAATGGAGATGACCAAGTGGTTTGATACCAACTACCACTTTATTGTCCCTGAACTGGGACCTGATGTGAATTTCACTTATGCATCCCACAAGGCAGTGGATGAGTACAAGGAGGCCAAGGCGCTTGGAGTAGATACAATCCCAGTCCTCATTGGCCCTGTATCATACTTGGTGCTCTCCAAACCTGCCAAGGGCGCTGATAAATCCTTCTCTCTTCTTTCCCTCCTCCCAAAAGTCATTGCTGTCTACAAAGAAGTTGTGGCTGATCTTAAGGCAGCTGGTGCTACATGGATTCAGTTTGATGAACCTACCCTTGTCTTGGACCTTGACCCTCACACATTGCAAGCATTTACTGCAACATACTCAGAACTTGAATCTACTTTATCTGGTCTAAATGTTCTTATTGAGACCTACTTTGCTGATGTTCCTGCTGAGGCATACAAGACCCTCACTACTCTGAATGGCATCACAGCGTTTGGATTTGATTTAGTCCGTGGAGCTAAGACTCTTGATTTGATCAAGGGAGGATTTCCCAGTGGAAAGCATCTGTTTGCTGGAGTGGTTGATGGAAGGAACATTTGGGCTAATGATCTTGCTGCTTCTCTCAGTACATTAACTAGTCTTGAGGGCATTGTGGGCAAAGATAACCTTGTTGTGTCCACCTCCTGCTCACTTCTTCACACTGCTGTTGATCTTGTTAATGAAACCAAGTTGGACAATGAGATAAAATCATGGCTGGCTTTTGCTGCCCAAAAAATTGTTGAAGTAAATGCATTGGCCAAAGCATTGTCTGGTCAAAAGGATGAGGCGTTCTTCTCTTCCAATGCTGCAGCTCAGGCTTCAAGAAAGTCCTCTCCTAGAGTGACCAATGAGGCTGTTCAGAAGGCTGCTGCTGCACTGAAGGGCTCTGATCATCGCCGTGCAACAAATGTCGGCGCCAGACTGGATGCTCAGCAAAAGAAGCTCAACCTTCCAGTTCTCCCAACGACCACAATTGGATCCTTCCCTCAGACTGTTGAACTGAGGAGGGTGCGCCGTGAATACAAGGCTAACAAGATCACGGAGGAAGAGTATGTTACTTCTATTAAAGAGGAGATCCGCAAAGTTGTTGAACTCCAAGAACAGCTTGATATTGATGTCCTGGTACATGGCGAGCCTGAGAGAAATGATATGGTTGAGTACTTTGGTGAGCAGTTATCTGGTTTTGCCTTTACTGTCAATGGGTGGGTGCAATCTTACGGATCTCGTTGTGTGAAGCCACCAATCATCTATGGTGATGTGAGTCGCCCAAAACCAATGACAGTATTCTGGTCATCTATGGCTCAGAGTATGACGAAACGCCCAATGAAAGGAATGCTTACCGGCCCAGTAACCATTCTCAACTGGTCCTTTGTTAGAAATGATCAACCTAGATCTGAGACTACCTACCAGATTGCTTTGGCTATCAAGGATGAAGTAGAAGATCTTGAAAAAGGTGGTATTGGTGTTATCCAAATCGACGAGGCTGCTTTGAGAGAGGGGCTTCCATTGAGGAAGTCAGAGCAAGCTCACTACTTGGACTGGGCTGTCCATGCCTTCAGAATTACCAATATTGGAGTGCAGGATACTACTCAGATCCACACCCACATGTGCTACTCTAACTTCAATGACATCATCCACTCTATCATCGATATGGATGCTGATGTGATCACCATTGAGAACTCACGTTCGGATGAGAAGCTTCTGTCGGTGTTCCGTGAAGGAGTTAAGTACGGAGCTGGAATTGGCCCTGGAGTCTATGATATTCACTCCCCCAGAATACCACCAACTGAAGAAATCGCAGACAGGATCAACAAGATGCTTGCAGTGCTTGAGACAAACATTTTGTGGGTAAACCCTGATTGTGGGCTCAAGACTCGCAAGTACACGGAGGTGAATCCAGCCCTCACAAACATGGTTGCTGCCACAAAGCTGATCCGCAACCAGCTTGCAAGTGGCAAGTGA 2298 0.473 MASHIVGYPRMGPKRELKFALESFWDGKSSAEDLKKVAAGLRASIWKQMADAGIKYIPSNTFSYYDQVLDATAMLGAVPPRYGWTGGEIGFDTYFSMARGNASVPAMEMTKWFDTNYHFIVPELGPDVNFTYASHKAVDEYKEAKALGVDTIPVLIGPVSYLVLSKPAKGADKSFSLLSLLPKVIAVYKEVVADLKAAGATWIQFDEPTLVLDLDPHTLQAFTATYSELESTLSGLNVLIETYFADVPAEAYKTLTTLNGITAFGFDLVRGAKTLDLIKGGFPSGKHLFAGVVDGRNIWANDLAASLSTLTSLEGIVGKDNLVVSTSCSLLHTAVDLVNETKLDNEIKSWLAFAAQKIVEVNALAKALSGQKDEAFFSSNAAAQASRKSSPRVTNEAVQKAAAALKGSDHRRATNVGARLDAQQKKLNLPVLPTTTIGSFPQTVELRRVRREYKANKITEEEYVTSIKEEIRKVVELQEQLDIDVLVHGEPERNDMVEYFGEQLSGFAFTVNGWVQSYGSRCVKPPIIYGDVSRPKPMTVFWSSMAQSMTKRPMKGMLTGPVTILNWSFVRNDQPRSETTYQIALAIKDEVEDLEKGGIGVIQIDEAALREGLPLRKSEQAHYLDWAVHAFRITNIGVQDTTQIHTHMCYSNFNDIIHSIIDMDADVITIENSRSDEKLLSVFREGVKYGAGIGPGVYDIHSPRIPPTEEIADRINKMLAVLETNILWVNPDCGLKTRKYTEVNPALTNMVAATKLIRNQLASGK* 766
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g2966 765 Pfam Cobalamin-independent synthase, Catalytic domain 432 755 IPR002629 GO:0003871|GO:0008270|GO:0009086
Lja2g2966 765 Gene3D - 390 758 IPR038071 -
Lja2g2966 765 SUPERFAMILY UROD/MetE-like 397 760 IPR038071 -
Lja2g2966 765 CDD CIMS_N_terminal_like 3 367 - -
Lja2g2966 765 PANTHER COBALAMIN-INDEPENDENT METHIONINE SYNTHASE 1 765 - -
Lja2g2966 765 Hamap 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase [metE]. 1 760 IPR006276 GO:0003871|GO:0008270|GO:0009086
Lja2g2966 765 TIGRFAM met_syn_B12ind: 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase 6 760 IPR006276 GO:0003871|GO:0008270|GO:0009086
Lja2g2966 765 PIRSF Met_synth_MetE 1 765 IPR006276 GO:0003871|GO:0008270|GO:0009086
Lja2g2966 765 PANTHER 5-METHYLTETRAHYDROPTEROYLTRIGLUTAMATE--HOMOCYSTEINE METHYLTRANSFERASE 1 765 - -
Lja2g2966 765 SUPERFAMILY UROD/MetE-like 3 395 IPR038071 -
Lja2g2966 765 CDD CIMS_C_terminal_like 433 756 IPR002629 GO:0003871|GO:0008270|GO:0009086
Lja2g2966 765 Gene3D - 5 525 IPR038071 -
Lja2g2966 765 Pfam Cobalamin-independent synthase, N-terminal domain 3 315 IPR013215 GO:0003871|GO:0008270|GO:0008652
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g2966 Lja-Chr2 54030801 54038222 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g2966 K00549 - gmx:100807833 1406.35
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g2966 2 54030801 54038222 Lja2g2966 2 54030801 54038222 ECH
Lja1g1556 1 16918324 16923077 Lja2g2966 2 54030801 54038222 PCT