Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g1556 ATGGCGTCGCATATTGTTGGATACCCACGAATGGGACCCAAGAGGGAGCTGAAGTTCGCTCTGGAATCATTCTGGGATGGGAAGACCAGTGCTGATGATTTGAAGAAGGTTTCTGCTGATCTCAGAGCATCCATCTGGAAGCAGATGGCTGGTGCTGGGATCAAGTATATCCCTAGCAACACTTTCTCTTACTATGATGGTGTGCTTGACGCCACCGCCACTCTCGGTGCCGTTCCTCCCAGGTACGGCTGGACCGGTGGCGAGATTGGCTTTGACACCTACTTCTCCATGGCTAGGGGTAACGCTACCGTTCCCGCTATGGAGATGACCAAGTGGTTCGACACCAACTACCACTTTATCGTCCCTGAGCTTGGACCTGAGGTGAAATTCGCTTACTCTTCTCACAAGGCTGTTGATGAGTACAAGGAGGCCAAGGCGCTTGGAGTAGATACCGTTCCAGTCCTCGTTGGCCCAGTGTCATACTTGTTGCTCTCCAAGCCTGCCAAGGGTGTTGAGAAATCCTTTTCTCTCCTCTCCCTGCTCCCCAAGGTCCTTGCTGTCTACAAGGAGGTTATTGCTGATCTTAAGGCAGCTGGTGCTTCATGGATTCAATTTGATGAACCTACACTTGTTTTGGACCTTGACTCTCACAAGCTTGCAGCATTTACTGAGGCATACTCAGAACTTGCATCTTCTTTGTCTGGTTTGAATGTTCTCGTTGAGACCTACTTTGCTGACATCCCTGCCGAGGCATTCAAGACCCTCACATCTTTGAGCGGTGTCACCGCTTATGGTTTGGATTTAGTCCGTGGAACTAAGACTCTTGATTTGGTCAAGGGTGGATTCCCCAGTGGAAAGTACCTCTTTGCTGGTGTGGTTGATGGAAGGAACATCTGGGCTAACGATCTTGCTTCTTCTCTTAACACACTAGCGGCTCTTGAGGGCATTGTTGGCAAAGACAAACTTGTTGTGTCCACCTCTTGCTCACTTCTTCACACTGCTGTTGATCTTGTTAATGAGACCAAGTTGGACGATGAGATCAAGTCATGGTTAGCTTTTGCTGCCCAAAAAATTGTGGAAGTGAATGCATTGGCTACTGCATTGTCTGGCAAGAAGGACGAGGCCTTCTTCTCTGCTAATGCTGCAGCTCTGGCTTCAAGAAAGTCCTCTCCAAGAGTGAATAATGAGGCTGTTCAGAAGGCTGCTGCTGCATTGAAGGGTTCTGACCATCGCCGTGCTACCAATGTCAGTGCCAGGTTGGATGCTCAACAAAAGAAGCTTAACCTTCCAATCCTCCCAACCACCACCATTGGATCCTTCCCTCAGACTGTTGAACTGAGGAGGGTGCGCCGTGAGTTCAAGGCTAACAAGATCTCTGAGGAAGAGTATATTAAGCAAATTAAGGAGGAAATCCGCAAAGTTGTTGAACTTCAAGAAGAGCTTGATATTGATGTCCTGGTGCACGGAGAGCCTGAGAGGAATGATATGGTTGAGTACTTTGGCGAGCAGTTGTCAGGCTTTGCCTTTACAGTTAATGGGTGGGTGCAATCCTATGGATCTCGTTGTGTGAAGCCACCAATCATCTACGGTGATGTGAGCCGCCCCAAGCCAATGACTGTCTTCTGGTCATCTCTTGCACAGAGCTTTACCAAGCGCCCAATGAAGGGAATGCTTACCGGCCCTGTCACCATTCTCAACTGGTCTTTTGTTAGAAATGACCAGCCTAGGTCTGAGACCACCTATCAGATTGCTTTGGCCATTAAGGACGAGGTAGAGGACCTTGAGAAGGGTGGCATTAATGTTATCCAGATTGATGAGGCTGCATTGAGAGAGGGGCTCCCACTAAGGAAGTCAGAGCAAGCTCACTACTTGGACTGGGCTGTTCACTCCTTCAGAATCACCAATGTTGGTGTTCAGGACACCACTCAGATCCACACTCACATGTGCTACTCCAACTTCAACGACATCATCCACTCCATCATTGATATGGATGCTGATGTTATCACCATTGAGAACTCTCGCTCCGACGAGAAGCTTCTGTCAGTGTTCCGTGAAGGAGTGAAGTATGGTGCTGGAATTGGCCCTGGTGTCTACGACATCCACTCCCCAAGAATCCCACCTACTGATGAAATTGCTGACAGGATCAACAAGATGCTTGCAGTGCTTGAGAAGAACGTCTTGTGGGTGAACCCTGACTGTGGTCTCAAGACCCGTAAGTACACCGAGGTGAAGCCAGCCCTCACCAACATGGTTGCTGCAGCAAAACAAATCCGCAACGAGCTCGCCAAGTGA 2292 0.4913 MASHIVGYPRMGPKRELKFALESFWDGKTSADDLKKVSADLRASIWKQMAGAGIKYIPSNTFSYYDGVLDATATLGAVPPRYGWTGGEIGFDTYFSMARGNATVPAMEMTKWFDTNYHFIVPELGPEVKFAYSSHKAVDEYKEAKALGVDTVPVLVGPVSYLLLSKPAKGVEKSFSLLSLLPKVLAVYKEVIADLKAAGASWIQFDEPTLVLDLDSHKLAAFTEAYSELASSLSGLNVLVETYFADIPAEAFKTLTSLSGVTAYGLDLVRGTKTLDLVKGGFPSGKYLFAGVVDGRNIWANDLASSLNTLAALEGIVGKDKLVVSTSCSLLHTAVDLVNETKLDDEIKSWLAFAAQKIVEVNALATALSGKKDEAFFSANAAALASRKSSPRVNNEAVQKAAAALKGSDHRRATNVSARLDAQQKKLNLPILPTTTIGSFPQTVELRRVRREFKANKISEEEYIKQIKEEIRKVVELQEELDIDVLVHGEPERNDMVEYFGEQLSGFAFTVNGWVQSYGSRCVKPPIIYGDVSRPKPMTVFWSSLAQSFTKRPMKGMLTGPVTILNWSFVRNDQPRSETTYQIALAIKDEVEDLEKGGINVIQIDEAALREGLPLRKSEQAHYLDWAVHSFRITNVGVQDTTQIHTHMCYSNFNDIIHSIIDMDADVITIENSRSDEKLLSVFREGVKYGAGIGPGVYDIHSPRIPPTDEIADRINKMLAVLEKNVLWVNPDCGLKTRKYTEVKPALTNMVAAAKQIRNELAK* 764
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g1556 763 Hamap 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase [metE]. 1 760 IPR006276 GO:0003871|GO:0008270|GO:0009086
Lja1g1556 763 Gene3D - 5 525 IPR038071 -
Lja1g1556 763 PIRSF Met_synth_MetE 1 763 IPR006276 GO:0003871|GO:0008270|GO:0009086
Lja1g1556 763 SUPERFAMILY UROD/MetE-like 3 395 IPR038071 -
Lja1g1556 763 CDD CIMS_C_terminal_like 433 755 IPR002629 GO:0003871|GO:0008270|GO:0009086
Lja1g1556 763 CDD CIMS_N_terminal_like 3 367 - -
Lja1g1556 763 Pfam Cobalamin-independent synthase, N-terminal domain 3 315 IPR013215 GO:0003871|GO:0008270|GO:0008652
Lja1g1556 763 Pfam Cobalamin-independent synthase, Catalytic domain 432 755 IPR002629 GO:0003871|GO:0008270|GO:0009086
Lja1g1556 763 PANTHER COBALAMIN-INDEPENDENT METHIONINE SYNTHASE 1 763 - -
Lja1g1556 763 Coils Coil 460 484 - -
Lja1g1556 763 PANTHER 5-METHYLTETRAHYDROPTEROYLTRIGLUTAMATE--HOMOCYSTEINE METHYLTRANSFERASE 1 763 - -
Lja1g1556 763 TIGRFAM met_syn_B12ind: 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase 6 760 IPR006276 GO:0003871|GO:0008270|GO:0009086
Lja1g1556 763 Gene3D - 390 758 IPR038071 -
Lja1g1556 763 SUPERFAMILY UROD/MetE-like 397 759 IPR038071 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g1556 Lja-Chr1 16918324 16923077 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g1556 K00549 - gmx:547643 1422.53
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g1556 1 16918324 16923077 Lja2g2966 2 54030801 54038222 PCT