Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g2964 ATGGACAGGCTCATAAAGTTAGACCCATCAAACACAGTCCTGATCAGGGTCGAACCTGGACAACAAAAGTGCCATGGAACTATCACCTTACGTAATGTCATGTACACCATGCCAGTGGCTTTTAGGCTTCAGCCATTGATCAAGACCCGTTACACCGTGAAGCCCCAATCAGGGATCATATCCCCTTTAGCCACACTCATCGTAGAGATCACCTACCACCCCCTACCAGGTTCTAATCTCCCACACTCTTTCCCTCACTCGGATGACTCTTTCTTTCTTCACAGTGTCTTGGCACCCGGTGTAGCCATCAAAGAACCTTCCTCCATGTTCGATTCCGTCCCAAACGATTGGTTCACCACTCGAAAGAAGCAAGTCTTCATCGACAGCGCCATCAAAATCATGTTCGTGGGGTCACAGATCCTCTCTCACCTTGTTGAAGATGGTAATTCAATGGATGACATCAGGGAGGTGCTAGAAAAAAGCGACACATCATGGAAATCGGTGAACTCCACAGACCAACAAGGCCGAACTCTGCTCCACTTGGCAGTTTCAAAAGCAAGACCAGATCTTGTTCAATTACTCCTTGAATTCGAACCTGATGTCGAAGCTGGCTTGAGTCGTTCTGGCGGCTCGAGTTCAACCCCACTCGAGGCTGCATCTTCCTCTGGTCAAGCTTTAATTGTTGAGCTCCTTCTAGCTCACAGGGCCAGCACCGAGCGGTCAGAGACATCAACGTTTGGACCAATCCACCACGCGGCGAGAGAAGGACATGTAGAGGTTCTGAGGCTTCTCTTGCTTAAAGGAGCCAAAGTGAATGCGCTCGTTAAAGATGGCGGCAACACTGCCCTGCACCTCGCTGTTGAAGAACGCCGAAGAGAATGTGTCAGGCTCCTCCTAGCAAACGGGGCCAGAACTGATATCAGAAACGCCAGAGAAGGTGATACAGCTTTGCACATAGCATCAGCCACAGGTGACGAGAGCATGGTGAAGCTCTTGCTACAAAAGGGCGCCAACAAAGACGCGAGGAACAATCAAGGGAAGATAGCATACGATGTTGCAGCCGAGAACGGCCACACGAAGCTCTTCGACGTACTTCGCTTGGGGGACAGATTGTGTGTGGCGGCGAGAAACGGCGAAGTGAGGAGCATCCACAAGGTCTTAGAAACTGGCGCTGCCATCAATGGAAGGGATCAGAATGGATGGACAGCGCTGCACAGAGCCTCGTTCAAAGGGAGAGTGGATGCAGTGAGGTTCCTTGACGAAGAAGGGTACACGGCTTTGCATTGTGCTGCTGAATCAGGCCATGCGGATGTGACGGAGTTTTTGGTGAAGAAGGGTGTGGATGTTGAAGCCAGAACCAGTAAAGGCGTGAGTGCGTTGCAAATAGCTGAGTCGTTGCATTATGTTGGGATTACGAGGATTCTTGTTAATGGTGGGGCTTGTAGAGAAAGTTTGAATCAAATGACGCAAGGAGCATCACCTGCTAAGATTCCATTTGTTATTAGTGGGGCTGTGATAAAGAAGAAGAAACAGATGGGCAGGATCAGAGTATATTGA 1557 0.4978 MDRLIKLDPSNTVLIRVEPGQQKCHGTITLRNVMYTMPVAFRLQPLIKTRYTVKPQSGIISPLATLIVEITYHPLPGSNLPHSFPHSDDSFFLHSVLAPGVAIKEPSSMFDSVPNDWFTTRKKQVFIDSAIKIMFVGSQILSHLVEDGNSMDDIREVLEKSDTSWKSVNSTDQQGRTLLHLAVSKARPDLVQLLLEFEPDVEAGLSRSGGSSSTPLEAASSSGQALIVELLLAHRASTERSETSTFGPIHHAAREGHVEVLRLLLLKGAKVNALVKDGGNTALHLAVEERRRECVRLLLANGARTDIRNAREGDTALHIASATGDESMVKLLLQKGANKDARNNQGKIAYDVAAENGHTKLFDVLRLGDRLCVAARNGEVRSIHKVLETGAAINGRDQNGWTALHRASFKGRVDAVRFLDEEGYTALHCAAESGHADVTEFLVKKGVDVEARTSKGVSALQIAESLHYVGITRILVNGGACRESLNQMTQGASPAKIPFVISGAVIKKKKQMGRIRVY* 519
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g2964 518 Gene3D - 133 243 IPR036770 -
Lja2g2964 518 SUPERFAMILY PapD-like 2 149 IPR008962 -
Lja2g2964 518 ProSiteProfiles Ankyrin repeat profile. 399 423 IPR002110 GO:0005515
Lja2g2964 518 Gene3D - 422 501 IPR036770 -
Lja2g2964 518 ProSiteProfiles Ankyrin repeat region circular profile. 422 452 - -
Lja2g2964 518 SMART ANK_2a 455 487 IPR002110 GO:0005515
Lja2g2964 518 SMART ANK_2a 174 203 IPR002110 GO:0005515
Lja2g2964 518 SMART ANK_2a 244 273 IPR002110 GO:0005515
Lja2g2964 518 SMART ANK_2a 312 341 IPR002110 GO:0005515
Lja2g2964 518 SMART ANK_2a 278 307 IPR002110 GO:0005515
Lja2g2964 518 SMART ANK_2a 422 451 IPR002110 GO:0005515
Lja2g2964 518 SMART ANK_2a 211 240 IPR002110 GO:0005515
Lja2g2964 518 ProSiteProfiles Ankyrin repeat region circular profile. 174 203 - -
Lja2g2964 518 ProSiteProfiles Ankyrin repeat region circular profile. 244 273 - -
Lja2g2964 518 Gene3D - 317 365 IPR036770 -
Lja2g2964 518 PANTHER CYCLIN-DEPENDENT KINASE INHIBITOR 2C-RELATED 1 495 - -
Lja2g2964 518 Gene3D Immunoglobulins 1 132 IPR013783 -
Lja2g2964 518 ProSiteProfiles Ankyrin repeat profile. 278 310 IPR002110 GO:0005515
Lja2g2964 518 ProSiteProfiles Ankyrin repeat region circular profile. 278 309 - -
Lja2g2964 518 ProSiteProfiles Ankyrin repeat profile. 422 454 IPR002110 GO:0005515
Lja2g2964 518 SUPERFAMILY Ankyrin repeat 167 485 IPR036770 -
Lja2g2964 518 ProSiteProfiles Ankyrin repeat profile. 174 206 IPR002110 GO:0005515
Lja2g2964 518 Gene3D - 366 421 IPR036770 -
Lja2g2964 518 Pfam MSP (Major sperm protein) domain 5 106 IPR000535 -
Lja2g2964 518 Gene3D - 244 316 IPR036770 -
Lja2g2964 518 ProSiteProfiles Major sperm protein (MSP) domain profile. 4 136 IPR000535 -
Lja2g2964 518 Pfam Ankyrin repeat 423 453 IPR002110 GO:0005515
Lja2g2964 518 Pfam Ankyrin repeat 313 344 IPR002110 GO:0005515
Lja2g2964 518 ProSiteProfiles Ankyrin repeat profile. 312 344 IPR002110 GO:0005515
Lja2g2964 518 Pfam Ankyrin repeats (many copies) 371 419 IPR002110 GO:0005515
Lja2g2964 518 ProSiteProfiles Ankyrin repeat region circular profile. 399 423 - -
Lja2g2964 518 ProSiteProfiles Ankyrin repeat region circular profile. 312 344 - -
Lja2g2964 518 Pfam Ankyrin repeats (3 copies) 157 237 IPR002110 GO:0005515
Lja2g2964 518 Pfam Ankyrin repeats (3 copies) 248 308 IPR002110 GO:0005515
Lja2g2964 518 ProSiteProfiles Ankyrin repeat profile. 244 276 IPR002110 GO:0005515
Lja2g2964 518 PANTHER ANKYRIN REPEAT AND PROTEIN KINASE DOMAIN-CONTAINING PROTEIN 1-LIKE 1 495 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g2964 Lja-Chr2 53654056 53657048 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g2964 86 353 Miscellaneous Gene Families AT3G09550 30.545 4.63e-21 94.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g2964 - - gmx:100782444 729.554
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g2964 2 53654056 53657048 Lja2g2964 2 53654056 53657048 ECH
Lja1g1555 1 16895191 16897189 Lja2g2964 2 53654056 53657048 PCT