Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g1555 ATGGACAGGCTCATAAGCTTAGACCCATCAAACCTAGTCCCAATAAGAATCGAACCAGGTGAAAAATGTCACGGCCAAATCACCTTACGCAATGTCATGTACACCATGCCGGTGGCGTTCCGCCTCCAACCACTCATCAAGACCCGTTACACCGTCAAGCCACACTCCGGTATCATCTCCCCTCTTGCCACCCTCACCGTGGAAATCACCTACCACCTCCCACCAGGCTCCATCCTCCCTCACTCGTTCCCCCACTCCGACGACTCCTTCCTCCTCCACAGCGTGGTCGTCCCCGGCGCCGCCACCAAGGAACCTTCCTCCATGTTTGAAGCCGTCCCCAACGACTGGTTCACCGCCAGAAAGAAGCAAGTCTTCATCGACAGCGGCATCAAGGTCATCTTCTTAGGCTCACCAATCTTAACCCACCTCATTGAACACGGTTCCATGGATGAAATCAGAGAGGTTCTTGAATGCAGCGACCCATCTTGGAAATCTGTTGATTCCACTGACCCACAAGGCAACACGCTTCTCCATTTGGCTATCTCACAGAAGAGACCAGATCTTGTTCAACTGCTCCTTGAATTCAAGCCAAACATTGAATCAGTCAACACAAACTGTGCTCGTTCTGGTTCTGGTGACTCTGTTTCAACAACAACACCATTGGAGTTGGCGTGTTCATTGGGTGAAGCTTTGATTGTTGAGCTTCTGTTAGCAAACAAGGCGAACACAGAGCGAGCTGAATCGTCGACATGGGGTCCGGTTCATCTTGCGGCGAGGGAAGGAAACGTGGAGGTTCTGCGGCTTCTGCTGCTGAAAGGGGCAGATGTTGATTCAAGGGCTAAGGACGGGAACACGGCGTTGCACCTCGCCGTGGAGGAGCGTCGGAGGGACTGCGTGAAGCTTCTGCTGGCGAACGGGGCGAGGACGGACATCCGTAACGGGAGAGACGGCGACACGGCGCTTCACGTGGCGGCGGTCACCGGGGAAGAGAGCGTGATCAGGACGCTGTTGCAGAAAGGCGCGAACAAGGATGTGAAGAATGGGCAGGGGAAGACGGCGTATGATGTGGCGGCGGAGAACGGGCAGAAGCGCGTCTTCGACGCGCTTCGCCTGGGAGACGGGCTGTGCGTGGCGGCGAGGAAGGGGGAGGTGGGGGAGGTCGTGAGACTGCTGGAGGGTGGCGCCGTGGTGAACGGGAGGGACCAGAACGGGTGGACGGCGCTGCACAGGGCGTGTTTCAAGGGGAGGGTGGAGGCGGTTCGTGTTCTGTTGGAAAAGGGTGCAGAGGTTGACGCGGCGGATAGAGACGGTTACACGGCGCTGCATTGCGCGGCGGAGGCGGGGTATGCTGACGTGGCGGAGGTGTTGGTGAAGAAGGGTGTGGATGTTGAGGCTAGAACCAATAAGGGTGTGACGGCGTTGCAGATAGCAGAGACTTTGCACTATGTTGGGATAACGAGGATACTGTTGAATAGTGGGGCTAGTAGTGATGGTTTGGATCAAATGGCTCAATCTGAGAAGATGAAGATGGTGAAGAAGAAGATGAAGAAGAAGAGAGTAGGAAGAAGAAACTCAGAGGTTGAACATTCAATGGCTTTAGCTGTTTTATAG 1611 0.5512 MDRLISLDPSNLVPIRIEPGEKCHGQITLRNVMYTMPVAFRLQPLIKTRYTVKPHSGIISPLATLTVEITYHLPPGSILPHSFPHSDDSFLLHSVVVPGAATKEPSSMFEAVPNDWFTARKKQVFIDSGIKVIFLGSPILTHLIEHGSMDEIREVLECSDPSWKSVDSTDPQGNTLLHLAISQKRPDLVQLLLEFKPNIESVNTNCARSGSGDSVSTTTPLELACSLGEALIVELLLANKANTERAESSTWGPVHLAAREGNVEVLRLLLLKGADVDSRAKDGNTALHLAVEERRRDCVKLLLANGARTDIRNGRDGDTALHVAAVTGEESVIRTLLQKGANKDVKNGQGKTAYDVAAENGQKRVFDALRLGDGLCVAARKGEVGEVVRLLEGGAVVNGRDQNGWTALHRACFKGRVEAVRVLLEKGAEVDAADRDGYTALHCAAEAGYADVAEVLVKKGVDVEARTNKGVTALQIAETLHYVGITRILLNSGASSDGLDQMAQSEKMKMVKKKMKKKRVGRRNSEVEHSMALAVL* 537
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g1555 536 ProSiteProfiles Ankyrin repeat profile. 469 501 IPR002110 GO:0005515
Lja1g1555 536 Pfam Ankyrin repeats (3 copies) 255 347 IPR002110 GO:0005515
Lja1g1555 536 Pfam Ankyrin repeats (3 copies) 375 466 IPR002110 GO:0005515
Lja1g1555 536 ProSiteProfiles Ankyrin repeat profile. 172 204 IPR002110 GO:0005515
Lja1g1555 536 Gene3D Immunoglobulins 1 125 IPR013783 -
Lja1g1555 536 ProSiteProfiles Ankyrin repeat region circular profile. 172 203 - -
Lja1g1555 536 ProSiteProfiles Ankyrin repeat region circular profile. 249 279 - -
Lja1g1555 536 ProSiteProfiles Ankyrin repeat profile. 216 248 IPR002110 GO:0005515
Lja1g1555 536 ProSiteProfiles Ankyrin repeat profile. 403 435 IPR002110 GO:0005515
Lja1g1555 536 Gene3D - 135 371 IPR036770 -
Lja1g1555 536 ProSiteProfiles Major sperm protein (MSP) domain profile. 4 135 IPR000535 -
Lja1g1555 536 Pfam MSP (Major sperm protein) domain 5 110 IPR000535 -
Lja1g1555 536 Gene3D - 373 437 IPR036770 -
Lja1g1555 536 ProSiteProfiles Ankyrin repeat region circular profile. 436 468 - -
Lja1g1555 536 SUPERFAMILY Ankyrin repeat 165 501 IPR036770 -
Lja1g1555 536 SMART ANK_2a 316 345 IPR002110 GO:0005515
Lja1g1555 536 SMART ANK_2a 216 245 IPR002110 GO:0005515
Lja1g1555 536 SMART ANK_2a 469 498 IPR002110 GO:0005515
Lja1g1555 536 SMART ANK_2a 282 311 IPR002110 GO:0005515
Lja1g1555 536 SMART ANK_2a 436 465 IPR002110 GO:0005515
Lja1g1555 536 SMART ANK_2a 349 378 IPR002110 GO:0005515
Lja1g1555 536 SMART ANK_2a 403 432 IPR002110 GO:0005515
Lja1g1555 536 SMART ANK_2a 249 278 IPR002110 GO:0005515
Lja1g1555 536 SMART ANK_2a 172 201 IPR002110 GO:0005515
Lja1g1555 536 ProSiteProfiles Ankyrin repeat region circular profile. 403 435 - -
Lja1g1555 536 PANTHER CYCLIN-DEPENDENT KINASE INHIBITOR 2C-RELATED 1 520 - -
Lja1g1555 536 Pfam Ankyrin repeat 173 199 IPR002110 GO:0005515
Lja1g1555 536 Gene3D - 438 523 IPR036770 -
Lja1g1555 536 PRINTS Ankyrin repeat signature 419 433 IPR002110 GO:0005515
Lja1g1555 536 PRINTS Ankyrin repeat signature 317 332 IPR002110 GO:0005515
Lja1g1555 536 SUPERFAMILY PapD-like 2 150 IPR008962 -
Lja1g1555 536 PANTHER ANKYRIN REPEAT AND PROTEIN KINASE DOMAIN-CONTAINING PROTEIN 1-LIKE 1 520 - -
Lja1g1555 536 ProSiteProfiles Ankyrin repeat profile. 282 314 IPR002110 GO:0005515
Lja1g1555 536 ProSiteProfiles Ankyrin repeat profile. 249 281 IPR002110 GO:0005515
Lja1g1555 536 ProSiteProfiles Ankyrin repeat profile. 436 468 IPR002110 GO:0005515
Lja1g1555 536 ProSiteProfiles Ankyrin repeat region circular profile. 316 347 - -
Lja1g1555 536 ProSiteProfiles Ankyrin repeat region circular profile. 282 313 - -
Lja1g1555 536 ProSiteProfiles Ankyrin repeat profile. 316 348 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g1555 Lja-Chr1 16895191 16897189 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g1555 314 490 Miscellaneous Gene Families AT3G09550 27.778 1.40e-07 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g1555 - - gmx:100782232 728.013
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g1555 1 16895191 16897189 Lja1g1555 1 16895191 16897189 ECH
Lja1g1555 1 16895191 16897189 Lja2g2964 2 53654056 53657048 PCT