Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g2938 ATGGAGGTACACTCTCCTGTTATAGCCAAAAGACTATGGAATGTGTTGAGGATCACCTTTTTTATGATCAGGAAAGGTTTGATATCAAAGAGGGAGCTGATTATGGATTTGAATTTGATGATGAAGAAAGGGAAATTGCTCAAAAAGTCTCTGAGAAATCTCATCCCAAATCCTGTTTTTACCCACGTTCCGAAACGAAAGCACCATCATTTCAACTTCCCCTGCAGCAATTATCCTGAAGTTATTGAAGAGATCAATGAACTGGCAGCACTTGAAATTCAAGAAGAAGAACCTAGAGCTGTGGTTTTGGTCCCCAAGACCCCTGAATACTTGTTCAACTTTAGGTTCGATCATGCATCTGATTTTGTGAGGGTGTCGAATTACTCATCCGAGGATGAAAATGAAGAGGGTGAAATAAATGGTCAAGTTGATGATCAGGCTGAAGATTTCATCAGAAGGTTCTATGAACAACTAAGAATGCAAACCCGAATGCAGTTACTGCAGTACCAAGAGATGTAA 519 0.3988 MEVHSPVIAKRLWNVLRITFFMIRKGLISKRELIMDLNLMMKKGKLLKKSLRNLIPNPVFTHVPKRKHHHFNFPCSNYPEVIEEINELAALEIQEEEPRAVVLVPKTPEYLFNFRFDHASDFVRVSNYSSEDENEEGEINGQVDDQAEDFIRRFYEQLRMQTRMQLLQYQEM* 173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g2938 172 Pfam Cotton fibre expressed protein 141 172 IPR008480 -
Lja2g2938 172 PANTHER AVR9/CF-9 RAPIDLY ELICITED PROTEIN-RELATED 56 172 - -
Lja2g2938 172 PANTHER OS01G0930500 PROTEIN 56 172 - -
Lja2g2938 172 PANTHER OS01G0930500 PROTEIN 1 55 - -
Lja2g2938 172 PANTHER AVR9/CF-9 RAPIDLY ELICITED PROTEIN-RELATED 1 55 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g2938 Lja-Chr2 50524102 50524712 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g2938 - - lja:Lj0g3v0355589.1 218.394
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g2938 2 50524102 50524712 Lja2g2938 2 50524102 50524712 ECH
Lja1g1647 1 18095440 18096615 Lja2g2938 2 50524102 50524712 PCT