Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g1647 ATGGAAGTACATTCTCAAGTTGCAGCCAAGAGACTGTGGAACGTGTTGAGGATCACCTTCTTCATGATCAGGAAGGGATTAATATCAAAGAGAAAGATGAATATGCACATGAATTTGATGATGAAGAAAGGGAAACTCCTCAGAAAATCTCTAAGCAATCTCATGCCATCACATCATCAACAACAACAACAACACCATTCATCTTATTATGAATTCTCTTGCAGCAACAGTCCAAACCCTGTTTTCTTCCACATGCCAAAGCGAAAGCACCACCGTTTCAACTTCCCCTGCATCCAAGCCCCTGAGGAATTTGAAGAGGGATCTCAATTGTATTTGTCACCGCTTAAAGTTGAAAATGATGATGTGCCTAAGGATGTGGCCGTGGTTCCTCCCAAGACCCCAGAATACACGTTCAACTTCCGGTTCGACGCGACCGAGTTTGCTCCTGGGGAGAGAAAGAGTATAACTCTCTCACCGTTCTCAGTGAGGGTTTCCAATTACTCTGCATTGGAAGAGAATGAAGAGGTTGGAAGTGGTCTAGTTGATGATCAGGCTGAGGATTTCATCAGAAGGTTCTATGAACAGCTAAAGACGCAGAGCCGCGGGCAATTAGCAGGGTTTTAA 624 0.4423 MEVHSQVAAKRLWNVLRITFFMIRKGLISKRKMNMHMNLMMKKGKLLRKSLSNLMPSHHQQQQQHHSSYYEFSCSNSPNPVFFHMPKRKHHRFNFPCIQAPEEFEEGSQLYLSPLKVENDDVPKDVAVVPPKTPEYTFNFRFDATEFAPGERKSITLSPFSVRVSNYSALEENEEVGSGLVDDQAEDFIRRFYEQLKTQSRGQLAGF* 208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g1647 207 PANTHER AVR9/CF-9 RAPIDLY ELICITED PROTEIN-RELATED 1 205 - -
Lja1g1647 207 Pfam Cotton fibre expressed protein 181 200 IPR008480 -
Lja1g1647 207 PANTHER OS01G0930500 PROTEIN 1 205 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g1647 Lja-Chr1 18095440 18096615 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g1647 - - qsu:112015919 216.853
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g1647 1 18095440 18096615 Lja1g1647 1 18095440 18096615 ECH
Lja1g1647 1 18095440 18096615 Lja2g2938 2 50524102 50524712 PCT