Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g2933 ATGTTGAGGGTTGCTGCTAGGAGGCTTTCTTCTCTCTCCTCGTCTCCGTGGAGTCCCAGCCACGCCGCCGCCTCCGCCTGCCTCTCTCGTAACTCCGTCGTCGATAGCCACAGATCCGACCCAGGCTCTCATTTCCTTCTTCCCTTCAGAGGTTTTGCTAATGAATCAGTGATCAATACAAGAGAAAACAGCATATTTCCTGAGATTCCCGCAACCATTGCTGCTGTCAAGAACCCTAGTGCTAAGATTCTTTATGATGAGCACAACCATGAACGATTTCCCCCAGGTGACCCAAACAAGAAGGCATTCGCCTACTTTGTCCTTACAGGTGGCAGGTTTGTTTATGCCTCTCTGGTCCGTCTCCTTGTACTCAAGTTTGTGCTTAGCATGTCTGCTAGTAAGGATGTTCTTGCTCTTGCTTCGCTTGAGGTCGATCTCTCCAGCATTGAGCCCGGCACTACAGTGACTGTTAAGTGGCGTGGAAAGCCGGTATTCATCAGGCGGCGAACAGAGGATGATATTAACCTGGCAAATAGTGTTGATGTTGGATCCCTTCGTGATCCACAACAGGATTCCGATAGAGTCAAGAACCCAGAATGGCTCGTTGTGATTGGGGTCTGCACACATCTGGGTTGCATTCCATTACCAAATGCTGGTGACTATGGTGGATGGTTTTGCCCATGCCACGGTTCCCATTATGATATTTCTGGCAGAATTAGGAAAGGACCAGCACCATACAATCTGGAGGTTCCCACTTACACTTTCTTGGAGGAAAACAAGTTGTTAATTGGTTGA 795 0.4868 MLRVAARRLSSLSSSPWSPSHAAASACLSRNSVVDSHRSDPGSHFLLPFRGFANESVINTRENSIFPEIPATIAAVKNPSAKILYDEHNHERFPPGDPNKKAFAYFVLTGGRFVYASLVRLLVLKFVLSMSASKDVLALASLEVDLSSIEPGTTVTVKWRGKPVFIRRRTEDDINLANSVDVGSLRDPQQDSDRVKNPEWLVVIGVCTHLGCIPLPNAGDYGGWFCPCHGSHYDISGRIRKGPAPYNLEVPTYTFLEENKLLIG* 265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g2933 264 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 27 - -
Lja2g2933 264 Pfam Rieske [2Fe-2S] domain 147 250 IPR017941 GO:0051537
Lja2g2933 264 CDD Rieske_cytochrome_bc1 141 264 - -
Lja2g2933 264 SUPERFAMILY ISP transmembrane anchor 82 137 - -
Lja2g2933 264 PRINTS Rieske 2Fe-2S subunit signature 202 213 IPR005805 GO:0016020|GO:0051537
Lja2g2933 264 PRINTS Rieske 2Fe-2S subunit signature 236 248 IPR005805 GO:0016020|GO:0051537
Lja2g2933 264 PRINTS Rieske 2Fe-2S subunit signature 224 236 IPR005805 GO:0016020|GO:0051537
Lja2g2933 264 Pfam Ubiquinol cytochrome reductase transmembrane region 95 135 IPR004192 GO:0008121
Lja2g2933 264 PANTHER CYTOCHROME B-C1 COMPLEX SUBUNIT RIESKE, MITOCHONDRIAL 1 264 - -
Lja2g2933 264 TIGRFAM Rieske_proteo: ubiquinol-cytochrome c reductase, iron-sulfur subunit 116 264 IPR006317 GO:0008121
Lja2g2933 264 Gene3D - 133 264 IPR036922 GO:0051537
Lja2g2933 264 SUPERFAMILY ISP domain 126 263 IPR036922 GO:0051537
Lja2g2933 264 ProSiteProfiles Rieske [2Fe-2S] iron-sulfur domain profile. 194 262 IPR017941 GO:0051537
Lja2g2933 264 PANTHER CYTOCHROME B-C1 COMPLEX SUBUNIT RIESKE, MITOCHONDRIAL 1 264 IPR014349 GO:0051537
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g2933 Lja-Chr2 49990197 49999365 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g2933 K00411 - gmx:100806917 454.136
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g1676 1 18499666 18502111 Lja2g2933 2 49990197 49999365 PCT