Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g1676 ATGTTGAGGGTTGCAGCTAAGAGGCTTTCTTCTTCTCTCTCCTCCTCCTCTCCATGGAGGACCAACCACGCCGCCTCCGCGTTCCTCTCCCGGAACCCCCTCGCTCCACCGTCCTCCACCTCCGATGAACGCGGATCCGACCCGTTCTCGCTCCGACCCGAATTCTTTCTTCCCTTCAGAGGATTTGCTACTGAATCGCTGGTGCACACAAAAGAAAACAGCCTTATTCCTGAAATTCCAGCAACTGTTGCAGCTGTTAAGAACCCTTCTTCTAAGATTGTATATGATGACCACAATCATGAACGATTTCCTCCAGGTGACCCTAGCAAAAGGGCATTTGCCTACTTTGTCCTAACAGGGGGTAGGTTTGTTTATGCCTCGCTAATCCGTCTCCTTGTCCTCAAGTTTGTGCTTAGCATGTCAGCAAGTAAGGATGTTCTTGCTCTGGCTTCGCTTGAAGTCGATCTCTCTAGCATTGAGCCAGGCACCACCGTGACTGTTAAGTGGCGTGGAAAGCCGGTCTTCATCAGGCGCAGGACAGAAGATGATATTAAGTTGGCAAACAGTGTTGATGTTGGTTCTCTTCGTGATCCCCAGCAGGATTCAGAGAGAGTCAAGAACCCAGAATGGCTCATTGTGATTGGGGTTTGCACACATCTTGGTTGCATTCCTTTGCCAAATGCTGGTGACTTTGGTGGATGGTTTTGCCCATGCCATGGTTCACACTATGATATTTCCGGAAGAATTAGGAAGGGACCAGCACCATACAATCTGGAGGTACCAACTTATACCTTCTTGGAGGAAAACAAGTTGATGATTGGTTGA 825 0.4897 MLRVAAKRLSSSLSSSSPWRTNHAASAFLSRNPLAPPSSTSDERGSDPFSLRPEFFLPFRGFATESLVHTKENSLIPEIPATVAAVKNPSSKIVYDDHNHERFPPGDPSKRAFAYFVLTGGRFVYASLIRLLVLKFVLSMSASKDVLALASLEVDLSSIEPGTTVTVKWRGKPVFIRRRTEDDIKLANSVDVGSLRDPQQDSERVKNPEWLIVIGVCTHLGCIPLPNAGDFGGWFCPCHGSHYDISGRIRKGPAPYNLEVPTYTFLEENKLMIG* 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g1676 274 TIGRFAM Rieske_proteo: ubiquinol-cytochrome c reductase, iron-sulfur subunit 130 274 IPR006317 GO:0008121
Lja1g1676 274 PRINTS Rieske 2Fe-2S subunit signature 234 246 IPR005805 GO:0016020|GO:0051537
Lja1g1676 274 PRINTS Rieske 2Fe-2S subunit signature 212 223 IPR005805 GO:0016020|GO:0051537
Lja1g1676 274 PRINTS Rieske 2Fe-2S subunit signature 246 258 IPR005805 GO:0016020|GO:0051537
Lja1g1676 274 PANTHER CYTOCHROME B-C1 COMPLEX SUBUNIT RIESKE, MITOCHONDRIAL 1 274 IPR014349 GO:0051537
Lja1g1676 274 CDD Rieske_cytochrome_bc1 151 274 - -
Lja1g1676 274 SUPERFAMILY ISP domain 136 273 IPR036922 GO:0051537
Lja1g1676 274 ProSiteProfiles Rieske [2Fe-2S] iron-sulfur domain profile. 204 272 IPR017941 GO:0051537
Lja1g1676 274 PANTHER CYTOCHROME B-C1 COMPLEX SUBUNIT RIESKE, MITOCHONDRIAL 1 274 - -
Lja1g1676 274 Gene3D - 143 274 IPR036922 GO:0051537
Lja1g1676 274 Pfam Ubiquinol cytochrome reductase transmembrane region 107 145 IPR004192 GO:0008121
Lja1g1676 274 Pfam Rieske [2Fe-2S] domain 157 260 IPR017941 GO:0051537
Lja1g1676 274 SUPERFAMILY ISP transmembrane anchor 91 147 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g1676 Lja-Chr1 18499666 18502111 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g1676 K00411 - gmx:100806917 462.996
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g1676 1 18499666 18502111 Lja1g1676 1 18499666 18502111 ECH
Lja1g1676 1 18499666 18502111 Lja2g2933 2 49990197 49999365 PCT