Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g2196 ATGGGTTCAGTGGTAATGCCGCAAGGCATGGAAGGTGTTGTAGAAGAACGTGAAGTTCAGAAAAGCTATTGGATTGAACATTCTTCAGATTTGTCCATGGAGTCAATGATGCTCGATTCCAACGCCTCCAATCTCGACAAGGAAGAGAGACCAGAAGTACTCTCCCTTCTACCTGCAATTGAAAGTAAATCAGTTATAGAGCTTGGAGCAGGTATTGGAAGATTTACAGGTGAATTGGCTAAGAAATCTGGCCAACTGCTTGCTGTGGACTTCATTGAGAGTGCAATAAAGAAGAATGAAAGCATTAATGGACACCACAAGAATGTCAAGTTCATGTGTGCTGATGTCACATCTCCAAACTTGCATGTTTCTGAAGGATCCGTTGATCTCATATTCTCGAACTGGTTACTTATGTATCTTTCAGATCAAGAGGTTGAGAATTTAGCTGAAAGGATGATCAAATGGTTAAATGTTGGTGGATATATATTCTTCAGAGAATCTTGTTTCCACCAATCTGGAGATTCAAAGAGAAAATACAACCCAACACACTACAGGGAACCCAGATTTTACACTAAGGTATTCAAAGAGTTCCATATGAGTGATAATAAGGGGAGTTCCTTTGAACTTTCTCTTGTTGGCTGTAAATGCATTGGAGCTTATGTCAGAAATAAGAAGAATCAAAACCAGATTTGCTGGATATGGCAAAAGGTTAGATCACAAGATGATAGGGGGTTCCAGAGGTTCTTAGATAGTGTTGAGTATAATCATAAGGATATTTTACTTTATGAGAGAGTTTTTGGCCAAGGCTTTGTGAGCACCGGAGGACTTGAAACAACAAGGGAGTTTGTGGCAAAATTGGGACTAAAGCCTGGTCAGAAAGTGCTGGATGTTGGTTGTGGTATTGGAGGTGGTGACTTTTACATGGCAGAAAATTTTGATGTTGAGGTTGTTGCCATTGACTTCTCCATAAACATGATTTCCATGGCTATTGAACGAGCCATTGGACTCAAATGCACTGTGGAATTTGAGTGTGCTGATTGCACTAGTAAAACATATCCTGAGAACACATTTGATGTGATCTACACTCGTGACACCTTGTTTCACATCAAAGATAAACCAGCACTTTTCAGATCATTTTACAAATGGTTGAAGATTGGAGGTACGCTTTTGATTACGGATTACTGCAAAAGTGGTGGAGATCTATCATTAGAATATGCTGAGTACATAAGAAAAAGAGGATATTATATCCATGACATGAAAGCATATTGTCAGATGCTTGAGAATGCTGGATTTGATGATGTGATTGCAGAGGATCAAACAAATTTGTTCATGAAAACTTTGCAACAGGAGTTACTTGGCATTGAGAACAAGAAGGAAGATTTCATTGATGACTTCTCTGAGGAAGACTACACTGAAATTATTGAAAGATGGAGGGCTAAGCAGATGAGGGGTGCAGCTGGTGAGCAGATATGGGGATTGTTCATTGCCAAGAAAAAATAA 1500 0.3933 MGSVVMPQGMEGVVEEREVQKSYWIEHSSDLSMESMMLDSNASNLDKEERPEVLSLLPAIESKSVIELGAGIGRFTGELAKKSGQLLAVDFIESAIKKNESINGHHKNVKFMCADVTSPNLHVSEGSVDLIFSNWLLMYLSDQEVENLAERMIKWLNVGGYIFFRESCFHQSGDSKRKYNPTHYREPRFYTKVFKEFHMSDNKGSSFELSLVGCKCIGAYVRNKKNQNQICWIWQKVRSQDDRGFQRFLDSVEYNHKDILLYERVFGQGFVSTGGLETTREFVAKLGLKPGQKVLDVGCGIGGGDFYMAENFDVEVVAIDFSINMISMAIERAIGLKCTVEFECADCTSKTYPENTFDVIYTRDTLFHIKDKPALFRSFYKWLKIGGTLLITDYCKSGGDLSLEYAEYIRKRGYYIHDMKAYCQMLENAGFDDVIAEDQTNLFMKTLQQELLGIENKKEDFIDDFSEEDYTEIIERWRAKQMRGAAGEQIWGLFIAKKK* 500
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g2196 499 Gene3D Vaccinia Virus protein VP39 249 499 IPR029063 -
Lja2g2196 499 Gene3D Vaccinia Virus protein VP39 17 248 IPR029063 -
Lja2g2196 499 PANTHER PHOSPHOETHANOLAMINE N-METHYLTRANSFERASE 3 14 499 IPR025771 GO:0000234|GO:0006656
Lja2g2196 499 Pfam Methyltransferase domain 65 160 IPR041698 -
Lja2g2196 499 Pfam Methyltransferase domain 280 434 - -
Lja2g2196 499 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 10 215 IPR029063 -
Lja2g2196 499 CDD AdoMet_MTases 293 394 - -
Lja2g2196 499 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 261 498 IPR029063 -
Lja2g2196 499 Coils Coil 444 464 - -
Lja2g2196 499 CDD AdoMet_MTases 65 164 - -
Lja2g2196 499 PANTHER PHOSPHOETHANOLAMINE METHYLTRANSFERASE 14 499 - -
Lja2g2196 499 ProSiteProfiles Phosphoethanolamine N-methyltransferase (PEAMT) (EC 2.1.1.103) family profile. 4 499 IPR025771 GO:0000234|GO:0006656
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g2196 Lja-Chr2 25035293 25041987 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g2196 15 498 Acyl Lipid Metabolism Gene Families AT3G18000 72.727 0.0 763
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g2196 K05929 - gmx:100818466 882.093
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g0014 4 113350 124570 Lja2g2196 2 25035293 25041987 PCT