Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g0557 ATGGCGGACTTAGTGAAACAAATCCTTGCTAAACCGATCCAGCTGGCCGACCAAGTAACCAAAGCCGCCGATGAAGCCAGCTTCTTCAAGCAGGAATGCTTCGAGCTCAAGTCCAAGACAGAAAAACTCGCCGCGCTGCTCCGGCAGGCGGCCAGAGCCAGCTCCGACCTCTACGAACGCCCTACCCGGCGGATCATTGAGGAAACAGAGCAAGTTCTTGACAAGGCTCTGTCATTGGTCATCAAGTGCCGTGCTAATGGCCTCATGAAGCGCGTCTTCACCATCGTCCCCGCCGCCGCCTTCCGGAAGACTTCCTCCCATCTCGAGAATTCCATCGGAGATGTCTCCTGGCTCCTCCGTGTCTCCGCCCCTGCTGACGACCGAGGAGATGAGTATCTTGGACTTCCTCCCATCGCTGCCAACGAGCCTATCTTGTGTCTCATATGGGAGCAGATCGCTATACTTTACACCGGCTCGCCGGAGGATCGCTCCGACGCGGCAGCCTCGCTGGTTTCCCTCGCTCGCGGCAGCGACCGGTACGGGAAGCTTATCATAGAAGAAGGTGGAGTTGGTCCACTGTTGAAGCTCATCAAGGAAGGGAAGATGGAAGGTCAGGAAAACGCAGCAAGAGTAATCGGCCTCCTTGGCCGTGACCCTGAAAGCGTGGAGGTAATGATCCACGCCGGAGTTTGCTCCGTCTTCGCGAAGGTTCTTAAAGAAGCTCCGATGAAGGTTCAGGCCGTTGTGGCCTGGGCGGTGTCGGAGCTTGCTGCTAACTACCCAAAATGTCAGGACCTTTTTGCTCAGCACAATATTATAAGGTTGCTGGTTGGCCATCTTGCTTTTGAGACGGTGGAGGAGCATAGCAAGTATGCTATTGTTAGCATGAAACCTACTTCGATCCACGCGGTGGTGATGGCGAATACAAACAATCCCAAGAAGGGAAATGAGAATGCAGATGGAGATAACAAGCAAGCACAGGGTCTGAATCGGTCACTACATCATCCCTTGGGTGAAAGGCCAAGAAATTTGCATAGGGTGATCACTAGTACAATGGCTATGCATAATGTTACCAAGCAAGGGCCTAATCAGGAAAATGAAGCAAACCAAAATCAGAACTCTTTAGCCAATGGAATTGGTAATGATGGGAAGCAAGGAAATCAACCCCTCCATCATAATCAGAATCAGACTAATCATCAGCGTAACTATTCGCATTCGGGGATTAACATGAAGGGAAGGGATAATGAAGACCCTGAGACAAAGGCTAGCATGAAGGAAATGGCAGCAAGGGCACTCTGGCACTTGGCTAAGGGTAATGTCCCGATTTGTCGTAGCATCACGGAATCGAGAGCTTTGTTGTGCTTTGCTGTTCTCCTTGAGAAAGGAGAGGAGAAGGTGCAGTACAATTCGGCCATGGCGGTGATGGAGATCACTGCTGTGGCTGAGAAAGATGCTGATTTGAGAAAGTCTGCATTCAAGCCAAACTCCCCTGCCTGCAAAGCGGTTGTTGATCAATTGCTTAAGATAATTGAGAAGGCAGATTCAGATCTCCTCATTCCTTGTGTCAGTGCTATTGGGAATTTGGCAAGGACTTTTCGTGCCACGGAGACGAGGATGATCGGTCCCTTGGTGCGGCTTCTTGATGAAAGAGAGGCAGAGGTATACAGGGAGGCGTCCATCGCCCTCACGAAATTCGCCTGCACTGATAACTACCTTCACCTTGATCACTCCAAGGCGATTATAACCGCAGGCGGGGCTAAACACTTGATTCAGCTTGTGTATTTCGGAGAACAGATGGTTCAGATTCCTGCATTAGTTCTGCTCTCCTACATTGCGCTGCACGTCCCGGACAGCGAAGAGCTTGCTCAGGATGAGGTGTTGGGAGTGCTTGAATGGGCATCAAAGCAATCTTCCATGACACATGATGAAACCCTTGAGGCTTTGCTGCAAGAATCCAAGAGTAGATTGGAGCTTTACCAGTCCAGAGGCTCAAGATTCCATAAATTACACCAATAG 2016 0.5064 MADLVKQILAKPIQLADQVTKAADEASFFKQECFELKSKTEKLAALLRQAARASSDLYERPTRRIIEETEQVLDKALSLVIKCRANGLMKRVFTIVPAAAFRKTSSHLENSIGDVSWLLRVSAPADDRGDEYLGLPPIAANEPILCLIWEQIAILYTGSPEDRSDAAASLVSLARGSDRYGKLIIEEGGVGPLLKLIKEGKMEGQENAARVIGLLGRDPESVEVMIHAGVCSVFAKVLKEAPMKVQAVVAWAVSELAANYPKCQDLFAQHNIIRLLVGHLAFETVEEHSKYAIVSMKPTSIHAVVMANTNNPKKGNENADGDNKQAQGLNRSLHHPLGERPRNLHRVITSTMAMHNVTKQGPNQENEANQNQNSLANGIGNDGKQGNQPLHHNQNQTNHQRNYSHSGINMKGRDNEDPETKASMKEMAARALWHLAKGNVPICRSITESRALLCFAVLLEKGEEKVQYNSAMAVMEITAVAEKDADLRKSAFKPNSPACKAVVDQLLKIIEKADSDLLIPCVSAIGNLARTFRATETRMIGPLVRLLDEREAEVYREASIALTKFACTDNYLHLDHSKAIITAGGAKHLIQLVYFGEQMVQIPALVLLSYIALHVPDSEELAQDEVLGVLEWASKQSSMTHDETLEALLQESKSRLELYQSRGSRFHKLHQ* 672
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g0557 671 Gene3D - 413 492 IPR011989 -
Lja2g0557 671 MobiDBLite consensus disorder prediction 309 330 - -
Lja2g0557 671 MobiDBLite consensus disorder prediction 360 409 - -
Lja2g0557 671 Gene3D - 493 650 IPR011989 -
Lja2g0557 671 Coils Coil 36 56 - -
Lja2g0557 671 PANTHER ARMADILLO REPEAT ONLY 4 1 666 - -
Lja2g0557 671 SMART arm_5 177 217 IPR000225 GO:0005515
Lja2g0557 671 SMART arm_5 439 479 IPR000225 GO:0005515
Lja2g0557 671 SMART arm_5 495 530 IPR000225 GO:0005515
Lja2g0557 671 SMART arm_5 573 613 IPR000225 GO:0005515
Lja2g0557 671 SMART arm_5 218 258 IPR000225 GO:0005515
Lja2g0557 671 MobiDBLite consensus disorder prediction 309 341 - -
Lja2g0557 671 Gene3D - 3 121 IPR036537 GO:0007166
Lja2g0557 671 SUPERFAMILY ARM repeat 153 639 IPR016024 -
Lja2g0557 671 PANTHER - 1 666 - -
Lja2g0557 671 Gene3D - 149 327 IPR011989 -
Lja2g0557 671 MobiDBLite consensus disorder prediction 360 418 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g0557 Lja-Chr2 5034049 5036683 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g0557 - - mtr:MTR_5g022240 1065.83
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g0557 2 5034049 5036683 Lja2g0557 2 5034049 5036683 ECH
Lja4g3131 4 59312270 59314790 Lja2g0557 2 5034049 5036683 PCT